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[179073_at]

Description C50B6.3 /REP_DB=WormBase Gene ID /WP=CE08872 /TR=O17689 /GB=CAB02852.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 93      6grp_total > 88      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 386.3
(3)
P 		222
(-2.7)
P 		211.9
(-3)
P 		275.2
(-0.8)
P 		174
B 321.4
(3)
P 		222.4
(-2.4)
P 		210.5
(-3)
P 		230.9
(-1.9)
P 		111
C 331.6
(3)
P 		206.7
(-3)
P 		225.9
(-2.1)
P 		300.9
(1.5)
P 		125
avr 346.4
(3) 		217
(-3) 		216.1
(-3) 		269
(-0.6) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 230.7
(-3)
P 		263.5
(-2.5)
P 		242.1
(-2.8)
P 		262.7
(-2.5)
P 		400.5
(-0.4)
P 		616.1
(3)
P 		385
B 270.2
(-2.7)
P 		297.5
(-2.3)
P 		297.4
(-2.3)
P 		252.8
(-3)
P 		453.1
(0.2)
P 		626.6
(3)
P 		374
C 257.8
(-3)
P 		308.5
(-2.3)
P 		267.6
(-2.9)
P 		274.5
(-2.8)
P 		396.7
(-1)
P 		665.1
(3)
P 		407
avr 252.9
(-3) 		289.8
(-2.4) 		269
(-2.7) 		263.3
(-2.8) 		416.8
(-0.4) 		635.9
(3) 		383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 140.7
(3)
P 		48.2
(-2.5)
P 		55.4
(-2.1)
P 		40.3
(-3)
P 		100
B 102.5
(3)
P 		54.9
(-2.3)
P 		48.8
(-3)
P 		49.2
(-3)
P 		54
C 109.8
(3)
P 		59.4
(-2.1)
P 		78.7
(-0.2)
P 		50.7
(-3)
P 		59
avr 117.7
(3) 		54.2
(-2.4) 		61
(-1.8) 		46.7
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 42.5
(-3)
P 		93.7
(-0.1)
P 		52.7
(-2.4)
P 		66.6
(-1.7)
P 		120.8
(1.4)
P 		150
(3)
P 		108
B 94
(-2)
P 		99
(-1.8)
P 		72.2
(-2.8)
P 		66.9
(-3)
P 		184.1
(1.2)
P 		233.6
(3)
P 		167
C 95.6
(-1.6)
P 		94.1
(-1.6)
P 		68.1
(-2.5)
P 		55.2
(-3)
P 		128.4
(-0.4)
P 		222.6
(3)
P 		167
avr 77.4
(-2.4) 		95.6
(-1.6) 		64.3
(-2.9) 		62.9
(-3) 		144.4
(0.5) 		202.1
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14060
Sequence Type Exemplar sequence
Representative Public ID C50B6.3 NCBI
Target Description C50B6.3 /REP_DB=WormBase Gene ID /WP=CE08872 /TR=O17689 /GB=CAB02852.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073898 NCBI Caenorhabditis elegans C50B6.3 (C50B6.3) mRNA, complete cds. 11/11 None
SNAP00000011264 ENSEMBL cdna:SNAP chromosome:CEL140:V:13316190:13318079:1 11/11 None
GENEFINDER00000011289 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13316190:13318079:1 11/11 None
C50B6.3 ENSEMBL cdna:known chromosome:CEL140:V:13316190:13318369:1 gene:C50B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13316189-13318079(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50B6.3
Entrez Gene 179811 Entrez gene
SwissProt O17689 EMBL-EBI
WormBase CE08872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02852 Hypothetical protein C50B6.3 [Caenorhabditis elegans] ref|NP_506299.1| C50B6.3 [Caenorhabditis elegans] 0.0
blast CAE62623 Hypothetical protein CBG06745 [Caenorhabditis briggsae] 1.0E-76
blast CAE62623 Hypothetical protein CBG06745 [Caenorhabditis briggsae] 1.0E-69
Sequence
Target Sequence 
>C. ELEGANS:179073_AT
aaggggtttctcaaagctcccgatggcttcaaaatagttcaaaaaggtggccgaccaaga
aaatatcctgcaagtgctactaaaaagcgaaagaagaaaacaccgagatcgtcgccaaag
aaaaaaatgagcaaggaatctccgataaaccatcagaaagagcccattgatgagcaaaaa
ccttctacatcattgcccatttattctgttgccacgctgaagccacgtcgaaaagttgtc
aaaacggcggacgaagttggactatgtgcaccaatttttgtaatgcaatctgaacttctc
aaaaagttcagagaagaggttcaacgtcggtatgccgaaggatctagtgctagtgaccag
gaaagagttcgaaatatggtttatgaagcatatgacaatatatatcatattaatcgactc
tcggcaaatgaagggcctcggatcctcacatcagaccagaagttggtaatgcagcaatat
aaaacaacatttcgccaaggtcctactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGGGTTTCTCAAAGCTCCCGATG 194 159 964 Antisense
GCTCCCGATGGCTTCAAAATAGTTC 206 299 979 Antisense
GTGGCCGACCAAGAAAATATCCTGC 21 491 1010 Antisense
GAAAACACCGAGATCGTCGCCAAAG 156 355 1059 Antisense
ATCATTGCCCATTTATTCTGTTGCC 188 31 1152 Antisense
GGACTATGTGCACCAATTTTTGTAA 462 523 1222 Antisense
AAGAGGTTCAACGTCGGTATGCCGA 185 151 1277 Antisense
GTATGCCGAAGGATCTAGTGCTAGT 622 453 1293 Antisense
CAAATGAAGGGCCTCGGATCCTCAC 519 193 1388 Antisense
GGATCCTCACATCAGACCAGAAGTT 403 511 1403 Antisense
ACAACATTTCGCCAAGGTCCTACTT 46 113 1447 Antisense
Sequence Source Affymetrix Proprietary Database