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[179072_at]

Description K10G4.6 /REP_DB=WormBase Gene ID /WP=CE16249 /TR=O45676 /GB=CAB07260.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      6grp_cgc > 63      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 5.5
(-3)
A 		28.9
(-1.4)
A 		8.3
(-2.8)
A 		93.1
(3)
A 		88
B 49.1
(0.2)
A 		37.9
(-3)
A 		39.9
(-2.4)
A 		59.2
(3)
A 		21
C 43.2
(0)
A 		3.6
(-3)
A 		16.2
(-2)
A 		82
(3)
A 		78
avr 32.6
(-1.8) 		23.5
(-2.8) 		21.5
(-3) 		78.1
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 7.1
(-2.9)
A 		5.9
(-3)
A 		33.8
(0.4)
A 		28.7
(-0.2)
A 		29.2
(-0.1)
A 		54.7
(3)
A 		49
B 22.7
(-2.1)
A 		44.9
(3)
M 		24.5
(-1.7)
A 		28.5
(-0.8)
A 		19
(-3)
A 		26.8
(-1.2)
A 		26
C 10.1
(-2.5)
A 		73.4
(3)
A 		7.1
(-2.8)
A 		40.1
(0.1)
A 		9
(-2.6)
A 		4.7
(-3)
A 		69
avr 13.3
(-3) 		41.4
(3) 		21.8
(-1.2) 		32.4
(1.1) 		19.1
(-1.8) 		28.7
(0.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2
(-3)
A 		6.3
(-0.8)
A 		2.2
(-2.9)
A 		13.6
(3)
A 		12
B 15.6
(3)
A 		9.4
(-2.8)
A 		9.2
(-3)
A 		12.6
(0.2)
A 		6
C 14.3
(3)
A 		1
(-3)
A 		5.6
(-0.9)
A 		13.8
(2.8)
A 		13
avr 10.6
(0.9) 		5.6
(-3) 		5.7
(-2.9) 		13.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.1
(-2.6)
A 		7.4
(0.1)
A 		7.3
(0)
A 		8.8
(0.8)
A 		13.3
(3)
A 		12
B 7.9
(-1.7)
A 		15
(3)
M 		5.9
(-3)
A 		7.6
(-1.9)
A 		7.7
(-1.8)
A 		10
(-0.3)
A 		9
C 3.7
(-2.4)
A 		22.4
(3)
A 		1.8
(-2.9)
A 		8.1
(-1.1)
A 		2.9
(-2.6)
A 		1.6
(-3)
A 		21
avr 4.3
(-3) 		13.2
(3) 		5
(-2.5) 		7.7
(-0.7) 		6.5
(-1.5) 		8.3
(-0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14743
Sequence Type Exemplar sequence
Representative Public ID K10G4.6 NCBI
Target Description K10G4.6 /REP_DB=WormBase Gene ID /WP=CE16249 /TR=O45676 /GB=CAB07260.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075032
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000034107 ENSEMBL cdna:SNAP chromosome:CEL140:V:17274580:17275496:1 11/11 None
GENEFINDER00000034120 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17274580:17280562:1 11/11 None
K10G4.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17274307:17275465:1 gene:K10G4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17274306-17275378(+) 100.0 100.0
Public Domain and Genome References
Ensembl K10G4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79212 Hypothetical protein K10G4.10 [Caenorhabditis elegans] ref|NP_001024050.1| K10G4.10 [Caenorhabditis elegans] 1.0E-141
blast T23586 hypothetical protein K10G4.6 - Caenorhabditis elegans 1.0E-131
blast T23586 hypothetical protein K10G4.6 - Caenorhabditis elegans 1.0E-130
blast CAB04557 Hypothetical protein K03D7.6 [Caenorhabditis elegans] ref|NP_507433.1| Serpentine Receptor, class H family member (srh-118) [Caenorhabditis elegans] 1.0E-121
blast CAB04557 Hypothetical protein K03D7.6 [Caenorhabditis elegans] ref|NP_507433.1| Serpentine Receptor, class H family member (srh-118) [Caenorhabditis elegans] 1.0E-120
blast CAA16414 Hypothetical protein Y61B8A.1 [Caenorhabditis elegans] ref|NP_507371.2| Serpentine Receptor, class H family member (srh-116) [Caenorhabditis elegans] 6.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-106
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.6E-31
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034107 5 20-39,60-77,129-151,164-186,201-223
GENEFINDER00000034120 7 20-39,60-77,129-151,164-186,201-223,595-617,637-659
Sequence
Target Sequence 
>C. ELEGANS:179072_AT
gtcgcaatagcactctgactcagaataagtttcgaatgactcgacgcaaaactagagtga
tattctactctctgtttttactaccctgcgtatcggtcatttttgttggaaagttgatac
ccgaagatcaagatgctgcaaagttattcgcattaatggaatatccatgtccaacaagag
agtttttcacatctgaagtgttaattgtgtttgctgacaagaatataatagaaggtgttg
ttcgaattttcccatttggttgtgcctatatctcaagcttcttccttttccaagtgtcta
ctcttatctactacatttgtgttgcaccttcaaacacgacttcaagagatacccagcaaa
aacagaaagtgtttctcatttgcattttacttcaaacttccattccactgtttcttggaa
tgtgtccaataattttgactttcatggctttcttaaccggtcactattatcaggaaatgg
caaatcttacattctgtagtcttggacttcacggtcttgcagaaagtatagctattgtta
ctgtgcatagaccttaccgaaaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCAATAGCACTCTGACTCAGAA 432 473 407 Antisense
TATTCTACTCTCTGTTTTTACTACC 677 663 467 Antisense
TTACTACCCTGCGTATCGGTCATTT 682 681 484 Antisense
GAAGGTGTTGTTCGAATTTTCCCAT 177 335 637 Antisense
TTCCTTTTCCAAGTGTCTACTCTTA 376 699 688 Antisense
CCAAGTGTCTACTCTTATCTACTAC 342 277 696 Antisense
AACTTCCATTCCACTGTTTCTTGGA 383 137 801 Antisense
AATTTTGACTTTCATGGCTTTCTTA 164 171 837 Antisense
GGCAAATCTTACATTCTGTAGTCTT 286 535 885 Antisense
TGGACTTCACGGTCTTGCAGAAAGT 135 545 909 Antisense
GTGCATAGACCTTACCGAAAAGCCA 656 477 949 Antisense
Sequence Source Affymetrix Proprietary Database