[Home] | [Total List]

[179071_at]

Description F31B9.3 /REP_DB=WormBase Gene ID /WP=CE17729 /TR=O62188 /GB=CAB04222.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 61.3
(-2.2)
A 		87.1
(-0.8)
A 		47.7
(-3)
A 		155.6
(3)
P 		108
B 77.9
(-1.5)
A 		105
(0.4)
P 		56.6
(-3)
A 		142
(3)
A 		85
C 67.5
(-3)
A 		92.4
(-1.5)
A 		70.8
(-2.8)
A 		164.3
(3)
P 		97
avr 68.9
(-2.3) 		94.8
(-0.7) 		58.4
(-3) 		154
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 49.4
(-1.6)
A 		70.4
(0)
P 		64.5
(-0.4)
A 		31.6
(-3)
A 		60.2
(-0.8)
A 		108.4
(3)
A 		77
B 64.7
(-0.1)
A 		31.7
(-3)
A 		43.9
(-1.9)
A 		55.4
(-0.9)
A 		57.8
(-0.7)
A 		99.6
(3)
A 		68
C 38.8
(-1.2)
A 		53.2
(-0.3)
A 		11.1
(-3)
A 		74.6
(1)
A 		48.7
(-0.6)
P 		105.2
(3)
A 		94
avr 51
(-2) 		51.8
(-1.9) 		39.8
(-3) 		53.9
(-1.7) 		55.6
(-1.5) 		104.4
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 22.3
(2.7)
A 		18.9
(0.7)
A 		12.5
(-3)
A 		22.8
(3)
P 		10
B 24.8
(1.1)
A 		25.9
(1.5)
P 		13.1
(-3)
A 		30.3
(3)
A 		17
C 22.4
(-3)
A 		26.6
(1.8)
A 		24.7
(-0.4)
A 		27.7
(3)
P 		5
avr 23.2
(0.8) 		23.8
(1.2) 		16.8
(-3) 		26.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.1
(-2.6)
A 		25
(2.5)
P 		14
(-1)
A 		8
(-3)
A 		18.2
(0.3)
A 		26.4
(3)
A 		18
B 22.5
(-0.3)
A 		10.6
(-3)
A 		10.7
(-3)
A 		14.7
(-2.1)
A 		23.5
(-0.1)
A 		37.1
(3)
A 		27
C 14.4
(-0.9)
A 		16.2
(-0.5)
A 		2.8
(-3)
A 		15
(-0.7)
A 		15.8
(-0.6)
P 		35.2
(3)
A 		32
avr 15.3
(-1.5) 		17.3
(-0.9) 		9.2
(-3) 		12.6
(-2.1) 		19.2
(-0.5) 		32.9
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17634
Sequence Type Exemplar sequence
Representative Public ID F31B9.3 NCBI
Target Description F31B9.3 /REP_DB=WormBase Gene ID /WP=CE17729 /TR=O62188 /GB=CAB04222.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078213 NCBI Caenorhabditis elegans F31B9.3 (F31B9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004213 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15923503:15924738:1 9/11 None
F31B9.3 ENSEMBL cdna:known chromosome:CEL140:X:15923395:15924665:1 gene:F31B9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004209 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15923394-15924665(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31B9.3
Entrez Gene 185143 Entrez gene
SwissProt O62188 EMBL-EBI
WormBase CE17729 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04222 Hypothetical protein F31B9.3 [Caenorhabditis elegans] ref|NP_510614.1| F31B9.3 [Caenorhabditis elegans] 1.0E-108
blast CAB04222 Hypothetical protein F31B9.3 [Caenorhabditis elegans] ref|NP_510614.1| F31B9.3 [Caenorhabditis elegans] 6.0E-83
Sequence
Target Sequence 
>C. ELEGANS:179071_AT
caccgcaatttgacacccaggaggccgcgcggtatggtttaatagtttttatgttagaga
gcgagatgggagcagataaagagagtaagagggagagagaatcgatttcgccatatgtga
actcattgttgtacttttctccgcattaccttgcatctcattaccagtttccgatcaaca
ttgccatggacaagtctaatgaagccggtcgttgtgatgttccagcgatgtcaattgagg
agatgcttccacagtgcgttgatatgtacgtggactttcccgatggccaacggatgcctg
tggatgagtttgtcaagcagtatgcgcctggaccctcgttctataatcgacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGCAATTTGACACCCAGGAGGC 523 195 56 Antisense
CAGGAGGCCGCGCGGTATGGTTTAA 387 57 73 Antisense
GAACTCATTGTTGTACTTTTCTCCG 505 349 174 Antisense
CGCATTACCTTGCATCTCATTACCA 603 253 197 Antisense
CCAGTTTCCGATCAACATTGCCATG 225 273 219 Antisense
TGAAGCCGGTCGTTGTGATGTTCCA 232 575 255 Antisense
GAGATGCTTCCACAGTGCGTTGATA 262 397 295 Antisense
TATGTACGTGGACTTTCCCGATGGC 556 653 318 Antisense
CCCGATGGCCAACGGATGCCTGTGG 668 259 334 Antisense
TTGTCAAGCAGTATGCGCCTGGACC 658 707 365 Antisense
GGACCCTCGTTCTATAATCGACTTT 694 521 385 Antisense
Sequence Source Affymetrix Proprietary Database