[Home] | [Total List]

[179070_at]

Description T27A8.5 /REP_DB=WormBase Gene ID /WP=CE06515 /TR=Q22827 /GB=CAA92224.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 28.4
(-3)
A 		53.3
(2.9)
A 		46.1
(1.2)
P 		53.8
(3)
A 		25
B 24.2
(-3)
A 		50.1
(3)
A 		39
(0.4)
A 		32.7
(-1)
A 		26
C 18.3
(-3)
A 		42.8
(0.1)
M 		30.6
(-1.4)
P 		65.7
(3)
M 		47
avr 23.6
(-3) 		48.7
(2.6) 		38.6
(0.3) 		50.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 45.5
(0.5)
A 		16.7
(-3)
A 		66.2
(3)
M 		55.1
(1.7)
P 		40.8
(-0.1)
M 		23.4
(-2.2)
A 		50
B 41.9
(1.5)
P 		46.4
(3)
A 		42.8
(1.8)
P 		28.6
(-3)
P 		30.1
(-2.5)
A 		31.8
(-1.9)
P 		18
C 18.3
(-2.7)
A 		70.7
(3)
P 		41.8
(-0.1)
A 		34.3
(-0.9)
A 		28.4
(-1.6)
A 		15.3
(-3)
A 		55
avr 35.2
(-0.4) 		44.6
(1.7) 		50.3
(3) 		39.3
(0.5) 		33.1
(-0.9) 		23.5
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 10.3
(0.4)
A 		11.6
(2.3)
A 		12.1
(3)
P 		7.9
(-3)
A 		4
B 7.7
(-2.2)
A 		12.4
(3)
A 		9
(-0.8)
A 		7
(-3)
A 		5
C 6
(-3)
A 		12.3
(3)
M 		10.7
(1.5)
P 		11.1
(1.9)
M 		6
avr 8
(-3) 		12.1
(3) 		10.6
(0.8) 		8.7
(-2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.4
(-1.1)
A 		5.9
(-2.9)
A 		14.4
(3)
M 		14
(2.7)
P 		12.3
(1.6)
M 		5.7
(-3)
A 		9
B 14.6
(2.3)
P 		15.5
(3)
A 		10.4
(-0.9)
P 		7.6
(-3)
P 		12.2
(0.5)
A 		11.9
(0.3)
P 		8
C 6.8
(-2.4)
A 		21.6
(3)
P 		10.6
(-1)
A 		6.9
(-2.3)
A 		9.2
(-1.5)
A 		5.1
(-3)
A 		17
avr 9.9
(-0.9) 		14.3
(3) 		11.8
(0.8) 		9.5
(-1.3) 		11.2
(0.2) 		7.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17845
Sequence Type Exemplar sequence
Representative Public ID T27A8.5 NCBI
Target Description T27A8.5 /REP_DB=WormBase Gene ID /WP=CE06515 /TR=Q22827 /GB=CAA92224.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078227 NCBI Caenorhabditis elegans T27A8.5 (T27A8.5) mRNA, complete cds. 11/11 None
SNAP00000006724 ENSEMBL cdna:SNAP chromosome:CEL140:X:16061722:16064413:-1 10/11 None
GENEFINDER00000006727 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16063778:16070299:-1 11/11 None
T27A8.5 ENSEMBL cdna:known chromosome:CEL140:X:16063774:16066791:-1 gene:T27A8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006726 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16063773-16066791(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A8.5
Entrez Gene 188970 Entrez gene
SwissProt Q22827 EMBL-EBI
WormBase CE06515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92224 Hypothetical protein T27A8.5 [Caenorhabditis elegans] ref|NP_510628.1| T27A8.5 [Caenorhabditis elegans] 0.0
blast NP_508311 C36C9.4 [Caenorhabditis elegans] gb|AAC67426.1| Hypothetical protein C36C9.4 [Caenorhabditis elegans] 1.0E-108
blast CAE71010 Hypothetical protein CBG17849 [Caenorhabditis briggsae] 1.0E-104
blast NP_508311 C36C9.4 [Caenorhabditis elegans] gb|AAC67426.1| Hypothetical protein C36C9.4 [Caenorhabditis elegans] 4.0E-96
blast CAE70402 Hypothetical protein CBG16972 [Caenorhabditis briggsae] 2.0E-93
blast CAA92224 Hypothetical protein T27A8.5 [Caenorhabditis elegans] ref|NP_510628.1| T27A8.5 [Caenorhabditis elegans] 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179070_AT
agttctggtcaattcgacactcatatgtgtgctgcgttgaaatatattttgaatacgatc
aactatctaagtgacaagagatataccaccattaaaggacacgcaatgtttgtgaatcct
caagcacagttgttctcactagaagctgctgtgaaagcagacgacgtcgtagaactacct
aatcgcaagtggttcatgttgtcaaaagctattgatccagagaaagtgagccgttggact
gctgataccttcaaggttaatgcacaatcattatgcacgcatgtgtatgaccagctggag
cttgtggatccatatatgggctgttatggtatctccgaaaacgctacaatctacattcca
atcgcacaacagtttttccaacgtttccgtgagttcgctgtggcgggattttccatgctt
gataaggaaacagtcaggaactacgtggaaagtcttcttcgggatatgatgaaaaacaaa
ttggacagagtgcgtcgtgtctacaaactcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCTGGTCAATTCGACACTCATA 161 65 1120 Antisense
GAATCCTCAAGCACAGTTGTTCTCA 694 329 1233 Antisense
TGAGCCGTTGGACTGCTGATACCTT 662 567 1346 Antisense
TGCACGCATGTGTATGACCAGCTGG 610 577 1393 Antisense
GACCAGCTGGAGCTTGTGGATCCAT 679 383 1408 Antisense
TATGGGCTGTTATGGTATCTCCGAA 663 653 1434 Antisense
GCTACAATCTACATTCCAATCGCAC 168 303 1462 Antisense
ATCGCACAACAGTTTTTCCAACGTT 169 37 1480 Antisense
TCCAACGTTTCCGTGAGTTCGCTGT 589 587 1496 Antisense
TTCGCTGTGGCGGGATTTTCCATGC 141 695 1513 Antisense
AGTGCGTCGTGTCTACAAACTCACA 542 59 1608 Antisense
Sequence Source Affymetrix Proprietary Database