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[179069_at]

Description C08E8.4 /REP_DB=WormBase Gene ID /WP=CE17378 /TR=O62041 /GB=CAB03858.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_high_8_8 > 42      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 53      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 140.4
(3)
P 		100
(-0.1)
P 		90.9
(-0.8)
P 		61.8
(-3)
A 		79
B 137
(3)
P 		133
(2.6)
P 		94.4
(-0.8)
P 		70
(-3)
P 		67
C 166
(3)
P 		138.3
(1.3)
P 		108.1
(-0.5)
P 		68.1
(-3)
P 		98
avr 147.8
(3) 		123.8
(1.2) 		97.8
(-0.7) 		66.6
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 826
1 2 3 4 5 6 range
A 130.1
(-3)
P 		203.5
(-2.5)
P 		567.8
(0.2)
P 		956.4
(3)
P 		449.7
(-0.7)
P 		222.4
(-2.3)
P 		826
B 243.5
(-3)
P 		253.5
(-2.9)
P 		427.4
(-1.4)
P 		924.7
(3)
P 		776.1
(1.7)
P 		290.3
(-2.6)
P 		681
C 254.7
(-2.7)
P 		221
(-3)
P 		255.8
(-2.7)
P 		915.7
(3)
P 		630.2
(0.5)
P 		292.7
(-2.4)
P 		695
avr 209.4
(-3) 		226
(-2.9) 		417
(-1.3) 		932.3
(3) 		618.7
(0.4) 		268.5
(-2.5) 		723
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 51.1
(3)
P 		21.7
(-1.2)
P 		23.8
(-0.9)
P 		9
(-3)
A 		42
B 43.7
(3)
P 		32.9
(0.8)
P 		21.9
(-1.5)
P 		14.9
(-3)
P 		29
C 54.9
(3)
P 		39.8
(0.9)
P 		37.7
(0.6)
P 		11.5
(-3)
P 		43
avr 49.9
(3) 		31.5
(0.1) 		27.8
(-0.5) 		11.8
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 24
(-3)
P 		72.4
(-1.7)
P 		123.7
(-0.3)
P 		242.6
(3)
P 		135.7
(0.1)
P 		54.1
(-2.2)
P 		219
B 84.7
(-3)
P 		84.4
(-3)
P 		103.8
(-2.5)
P 		244.9
(1.2)
P 		315.3
(3)
P 		108.3
(-2.4)
P 		231
C 94.4
(-1.7)
P 		67.4
(-2.9)
P 		65.1
(-3)
P 		184.1
(2.1)
P 		203.9
(3)
P 		98
(-1.6)
P 		139
avr 67.7
(-3) 		74.7
(-2.7) 		97.5
(-1.9) 		223.9
(3) 		218.3
(2.8) 		86.8
(-2.3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12941
Sequence Type Exemplar sequence
Representative Public ID C08E8.4 NCBI
Target Description C08E8.4 /REP_DB=WormBase Gene ID /WP=CE17378 /TR=O62041 /GB=CAB03858.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075191 NCBI Caenorhabditis elegans C08E8.4 (C08E8.4) mRNA, complete cds. 11/11 None
SNAP00000008159 ENSEMBL cdna:SNAP chromosome:CEL140:V:18373799:18375356:1 10/11 None
GENEFINDER00000008169 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18374411:18375356:1 11/11 None
C08E8.4 ENSEMBL cdna:known chromosome:CEL140:V:18374411:18375360:1 gene:C08E8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18374410-18375360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E8.4
Entrez Gene 182409 Entrez gene
SwissProt O62041 EMBL-EBI
WormBase CE17378 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03858 Hypothetical protein C08E8.4 [Caenorhabditis elegans] ref|NP_507592.1| C08E8.4 [Caenorhabditis elegans] 4.0E-84
blast CAB03858 Hypothetical protein C08E8.4 [Caenorhabditis elegans] ref|NP_507592.1| C08E8.4 [Caenorhabditis elegans] 2.0E-83
blast CAB03858 Hypothetical protein C08E8.4 [Caenorhabditis elegans] ref|NP_507592.1| C08E8.4 [Caenorhabditis elegans] 2.0E-55
blast CAE56203 Hypothetical protein CBG23827 [Caenorhabditis briggsae] 6.0E-33
blast CAE56203 Hypothetical protein CBG23827 [Caenorhabditis briggsae] 2.0E-32
blast CAE62231 Hypothetical protein CBG06284 [Caenorhabditis briggsae] 8.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179069_AT
caatattttcagtttttgctgttttttggcttaaatttcatgaaaaatccgaaaaagaag
aatttgactttgcaaaaaattatagagaccaaattctgaaaaatcacttcagagtaatgc
atacacgtattcttaacgctaaaaaccaacaaacctatgttcttttttacgaagatgaat
cggttttttccaactttcacccatcgaatttcgaagcggaaactgcgaagaaactggtga
attctgggatgtttaaggaagaggaaatgttgaaattcaattgcagtgagcagtatttta
tgtaccataaggcgcttcttgtcggagatgttgactcggcaaaagtcataatcacagcta
aacatccgatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATATTTTCAGTTTTTGCTGTTTT 304 181 41 Antisense
TGCATACACGTATTCTTAACGCTAA 150 579 158 Antisense
ACCTATGTTCTTTTTTACGAAGATG 464 85 193 Antisense
GAAGATGAATCGGTTTTTTCCAACT 526 337 211 Antisense
CCAACTTTCACCCATCGAATTTCGA 244 275 230 Antisense
GCGGAAACTGCGAAGAAACTGGTGA 657 291 256 Antisense
ACTGGTGAATTCTGGGATGTTTAAG 392 95 273 Antisense
GTACCATAAGGCGCTTCTTGTCGGA 388 457 342 Antisense
CTTGTCGGAGATGTTGACTCGGCAA 709 217 358 Antisense
ACTCGGCAAAAGTCATAATCACAGC 338 99 374 Antisense
TAATCACAGCTAAACATCCGATGGT 449 635 389 Antisense
Sequence Source Affymetrix Proprietary Database