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[179068_s_at]

Description T01D3.5 /REP_DB=WormBase Gene ID /WP=CE12962 /TR=Q9XVJ5 /GB=CAB03256.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 88      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 95      6grp_total > 78      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 644
1 2 3 4 range
A 552.6
(-3)
P 		560.1
(-2.9)
P 		725.6
(-1.2)
P 		1143.5
(3)
P 		591
B 626.3
(-2.7)
P 		597.6
(-3)
P 		632
(-2.7)
P 		1197
(3)
P 		599
C 637.5
(-3)
P 		669.3
(-2.5)
P 		703.2
(-2)
P 		1037.7
(3)
P 		400
avr 605.5
(-3) 		609
(-3) 		686.9
(-2.1) 		1126.1
(3) 		521

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 563.2
(-1.6)
P 		433.1
(-3)
P 		442.6
(-2.9)
P 		517.3
(-2.1)
P 		778.7
(0.6)
P 		1006.2
(3)
P 		573
B 581.3
(-2.3)
P 		543.7
(-2.7)
P 		520.7
(-3)
P 		610.4
(-2)
P 		735.6
(-0.5)
P 		1033.3
(3)
P 		513
C 617.1
(-2)
P 		556.3
(-2.6)
P 		517.6
(-3)
P 		552.7
(-2.7)
P 		805.9
(-0.2)
P 		1145
(3)
P 		627
avr 587.2
(-2) 		511
(-2.8) 		493.6
(-3) 		560.1
(-2.3) 		773.4
(-0) 		1061.5
(3) 		568
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 201.2
(3)
P 		121.6
(-3)
P 		189.7
(2.1)
P 		167.4
(0.5)
P 		80
B 199.7
(-0.1)
P 		147.6
(-2.9)
P 		146.5
(-3)
P 		255.1
(3)
P 		109
C 211
(0.1)
P 		192.4
(-1.5)
P 		245.1
(3)
P 		175
(-3)
P 		70
avr 204
(3) 		153.9
(-3) 		193.8
(1.8) 		199.2
(2.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 103.8
(-2.7)
P 		154
(-0.7)
P 		96.4
(-3)
P 		131.2
(-1.6)
P 		235
(2.6)
P 		245
(3)
P 		149
B 202.3
(-1.2)
P 		181
(-1.7)
P 		126.4
(-3)
P 		161.7
(-2.2)
P 		298.9
(1)
P 		385.3
(3)
P 		259
C 228.7
(-0.4)
P 		169.7
(-1.7)
P 		131.7
(-2.5)
P 		111.2
(-3)
P 		260.8
(0.3)
P 		383.3
(3)
P 		272
avr 178.3
(-1.4) 		168.2
(-1.6) 		118.2
(-3) 		134.7
(-2.5) 		264.9
(1) 		337.9
(3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179068_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14332
Sequence Type Exemplar sequence
Representative Public ID T01D3.5 NCBI
Target Description T01D3.5 /REP_DB=WormBase Gene ID /WP=CE12962 /TR=Q9XVJ5 /GB=CAB03256.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073992 NCBI Caenorhabditis elegans T01D3.5 (T01D3.5) mRNA, complete cds. 11/11 None
SNAP00000036022 ENSEMBL cdna:SNAP chromosome:CEL140:V:13715869:13717803:-1 11/11 None
GENEFINDER00000036030 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13715869:13717860:-1 11/11 None
T01D3.5 ENSEMBL cdna:known chromosome:CEL140:V:13715596:13717863:-1 gene:T01D3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13715868-13717860(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01D3.5
Entrez Gene 179862 Entrez gene
SwissProt Q9XVJ5 EMBL-EBI
WormBase CE12962 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25353.1.S1_AT similar to solute carrier family 39 (zinc transporter), member 9 cfa
DROSOPHILA_2:1626088_AT dm
DROSGENOME1:150976_AT dm
CHICKEN:GGA.2489.1.S1_S_AT solute carrier family 39 (zinc transporter), member 9 gga
CHICKEN:GGAAFFX.12788.1.S1_S_AT solute carrier family 39 (zinc transporter), member 9 gga
HG-U133_PLUS_2:217859_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A:217859_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A_2:217859_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBA:AA404214_AT solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBC:RC_N75308_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBD:RC_AA456641_AT solute carrier family 39 (zinc transporter), member 9 hs
U133_X3P:G8922967_3P_A_AT solute carrier family 39 (zinc transporter), member 9 hs
U133_X3P:HS.18104.0.S2_3P_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:222445_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133B:222445_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U95B:45248_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U95B:56089_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U95E:74935_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:216009_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A_2:216009_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A:216009_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBA:U92027_AT Solute carrier family 39 (zinc transporter), member 9 hs
HUGENEFL:U92027_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBC:RC_F02232_AT Solute carrier family 39 (zinc transporter), member 9 hs
U133_X3P:HS.159211.0.S1_3P_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:216011_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A_2:216011_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A:216011_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:242115_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133B:242115_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBA:D82557_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBD:RC_AA190884_AT Solute carrier family 39 (zinc transporter), member 9 hs
MOUSE430_2:1421249_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430A_2:1421249_AT solute carrier family 39 (zinc transporter), member 9 mm
MOE430A:1421249_AT solute carrier family 39 (zinc transporter), member 9 mm
MU11KSUBA:AA028499_S_AT solute carrier family 39 (zinc transporter), member 9 mm
MG-U74AV2:102232_AT solute carrier family 39 (zinc transporter), member 9 mm
MOE430A:1452765_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430A_2:1452765_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430_2:1452765_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430A_2:1421250_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
MOE430A:1421250_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
MOUSE430_2:1421250_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
MU19KSUBA:TC22816_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03256 Hypothetical protein T01D3.5 [Caenorhabditis elegans] ref|NP_506393.1| T01D3.5 [Caenorhabditis elegans] 0.0
blast CAB03256 Hypothetical protein T01D3.5 [Caenorhabditis elegans] ref|NP_506393.1| T01D3.5 [Caenorhabditis elegans] 1.0E-177
blast CAE66258 Hypothetical protein CBG11502 [Caenorhabditis briggsae] 1.0E-162
blast CAE66258 Hypothetical protein CBG11502 [Caenorhabditis briggsae] 1.0E-156
blast CAE66258 Hypothetical protein CBG11502 [Caenorhabditis briggsae] 1.0E-153
blast XP_392671 PREDICTED: similar to ENSANGP00000016834 [Apis mellifera] 4.0E-50
blast XP_392671 PREDICTED: similar to ENSANGP00000016834 [Apis mellifera] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 6.4E-76
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.1E-69
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.3E-49
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.4E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506393.1 7 4-26,33-55,171-193,206-228,238-260,273-295,305-324
T01D3.5 7 4-26,33-55,171-193,206-228,238-260,273-295,305-324
SNAP00000036022 5 152-174,187-209,219-241,254-276,286-305
GENEFINDER00000036030 7 4-26,33-55,171-193,206-228,238-260,273-295,327-349
Sequence
Target Sequence 
>C. ELEGANS:179068_S_AT
tgggatttgtactcatgcttcttgttgatcaaattggaagtgtcacggtggcaagaaatg
atagagcagggagaagccgaattggaatctctgccacaattgggctcgtggtacacgctg
cagcggacggtgtcgcattaggaagtgcttcagtcatcaacaaatccgatgttcaaataa
ttgtttttgttgctataatgcttcacaaagcacccgctgcattcggacttgtctcatttt
tattaatggaatcgattgatcgacgagcaattcgcaaacatctcgttgtgttttcagctg
ctgcaccacttgccgcactcgtcacatttgtattaattatgcagatgggtgaatcaatgc
gatcagaatcatcaacaggtgtattaatgctcttctcagctggcacattcctctacgtgg
ctacagtacatgtgctaccagaattagctaacaacaagcagacagagtattctcttgtcg
tggatgcaactgcaccatcttcaataggacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGATTTGTACTCATGCTTCTTGT 374 553 548 Antisense
GAATCTCTGCCACAATTGGGCTCGT 309 329 632 Antisense
TGGTACACGCTGCAGCGGACGGTGT 428 545 656 Antisense
GTGCTTCAGTCATCAACAAATCCGA 647 479 692 Antisense
TCACAAAGCACCCGCTGCATTCGGA 595 627 750 Antisense
GAGCAATTCGCAAACATCTCGTTGT 209 391 812 Antisense
GTTGTGTTTTCAGCTGCTGCACCAC 472 437 832 Antisense
TATTAATGCTCTTCTCAGCTGGCAC 629 663 929 Antisense
CACATTCCTCTACGTGGCTACAGTA 302 195 951 Antisense
AGAGTATTCTCTTGTCGTGGATGCA 604 67 1011 Antisense
AACTGCACCATCTTCAATAGGACAT 695 141 1035 Antisense
Sequence Source Affymetrix Proprietary Database