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[179067_at]

Description K11B4.2 /REP_DB=WormBase Gene ID /WP=CE23868 /TR=O45685 /GB=CAB04601.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 87      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 21      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 283
(-0.3)
P 		264.7
(-0.9)
P 		194.8
(-3)
P 		392.5
(3)
P 		198
B 321.2
(0.9)
P 		223.3
(-2.1)
P 		192.1
(-3)
P 		392
(3)
P 		200
C 297.1
(1.4)
P 		285.2
(0.8)
P 		199.2
(-3)
P 		334.2
(3)
P 		135
avr 300.4
(0.5) 		257.7
(-0.9) 		195.4
(-3) 		372.9
(3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 352.7
(-1.2)
P 		275.9
(-3)
P 		319.2
(-2)
P 		426.4
(0.6)
P 		409
(0.2)
P 		525.4
(3)
P 		250
B 293.2
(-2.5)
P 		286.9
(-2.7)
P 		269.1
(-3)
P 		306.9
(-2.3)
P 		428.7
(0)
P 		584.8
(3)
P 		316
C 320.6
(-2)
P 		260.5
(-3)
P 		308
(-2.2)
P 		413.9
(-0.4)
P 		429.2
(-0.1)
P 		609.5
(3)
P 		349
avr 322.2
(-2) 		274.4
(-3) 		298.8
(-2.5) 		382.4
(-0.8) 		422.3
(-0) 		573.2
(3) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 103
(3)
P 		57.5
(-2.2)
P 		50.9
(-3)
P 		57.5
(-2.2)
P 		52
B 102.4
(3)
P 		55.2
(-1.9)
P 		44.5
(-3)
P 		83.5
(1)
P 		58
C 98.3
(3)
P 		82
(0.7)
P 		69.4
(-1.1)
P 		56.3
(-3)
P 		42
avr 101.2
(3) 		64.9
(-1.7) 		54.9
(-3) 		65.8
(-1.6) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 65
(-3)
P 		98.1
(0.2)
P 		69.5
(-2.6)
P 		108.1
(1.1)
P 		123.4
(2.6)
P 		127.9
(3)
P 		63
B 102
(-1.6)
P 		95.5
(-1.8)
P 		65.3
(-3)
P 		81.3
(-2.4)
P 		174.2
(1.3)
P 		218.1
(3)
P 		153
C 118.8
(-1.1)
P 		79.5
(-2.9)
P 		78.4
(-3)
P 		83.2
(-2.8)
P 		138.9
(-0.1)
P 		204
(3)
P 		126
avr 95.3
(-1.7) 		91
(-1.9) 		71.1
(-3) 		90.9
(-1.9) 		145.5
(1) 		183.3
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.342
Sequence Type Exemplar sequence
Representative Public ID K11B4.2 NCBI
Target Description K11B4.2 /REP_DB=WormBase Gene ID /WP=CE23868 /TR=O45685 /GB=CAB04601.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061180 NCBI Caenorhabditis elegans K11B4.2 (K11B4.2) mRNA, complete cds. 11/11 None
SNAP00000013701 ENSEMBL cdna:SNAP chromosome:CEL140:I:14803782:14806730:1 11/11 None
GENEFINDER00000013702 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14805809:14806808:1 11/11 None
K11B4.2 ENSEMBL cdna:known chromosome:CEL140:I:14805783:14806794:1 gene:K11B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14805739-14806661(+) 99.12 100.0
Public Domain and Genome References
Gene Title
Ensembl K11B4.2
Entrez Gene 173350 Entrez gene
SwissProt O45685 EMBL-EBI
WormBase CE23868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07392 Hypothetical protein K11B4.1 [Caenorhabditis elegans] emb|CAB04602.4| Hypothetical protein K11B4.1 [Caenorhabditis elegans] ref|NP_493580.1| K11B4.1 [Caenorhabditis elegans] 1.0E-133
blast CAE72532 Hypothetical protein CBG19712 [Caenorhabditis briggsae] 5.0E-94
blast CAB04601 Hypothetical protein K11B4.2 [Caenorhabditis elegans] ref|NP_493581.1| K11B4.2 [Caenorhabditis elegans] 3.0E-68
blast CAB04601 Hypothetical protein K11B4.2 [Caenorhabditis elegans] ref|NP_493581.1| K11B4.2 [Caenorhabditis elegans] 1.0E-66
blast CAB04601 Hypothetical protein K11B4.2 [Caenorhabditis elegans] ref|NP_493581.1| K11B4.2 [Caenorhabditis elegans] 2.0E-65
blast CAE72533 Hypothetical protein CBG19713 [Caenorhabditis briggsae] 1.0E-53
blast CAE72533 Hypothetical protein CBG19713 [Caenorhabditis briggsae] 7.0E-51
blast XP_623980 PREDICTED: similar to ENSANGP00000013145 [Apis mellifera] 6.0E-13
Sequence
Target Sequence 
>C. ELEGANS:179067_AT
tccatcgtctacaccgaatcggacccgtgaaattgaaagtcgatcaagaattatttccga
acgaatatgtgaaagcgtgcgactactggacaacgaaccgtctcttgcgctgtacagact
tcaagaacatacggtcagaagcttaccaggactcgtgaaccgaagaataatgctcactca
acagtcagcaacactttctggagctcaattcgatctggaaaacacgctaagcacaacgac
aagcatgcaaaatgcgacgtcagcatttgacaactgtatcgaattgctcagaaattgcat
gttctataagcaacaattggatttcgattcaacacgaaaagccacgtcatcagcggaatc
ttcaactgtaaaaggacggagcaagtcgttgcacaatgtggcaacgcgtgtacactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATCGTCTACACCGAATCGGACC 585 587 21 Antisense
TGAAAGCGTGCGACTACTGGACAAC 281 573 90 Antisense
TACTGGACAACGAACCGTCTCTTGC 456 645 104 Antisense
GTCTCTTGCGCTGTACAGACTTCAA 76 471 120 Antisense
GAAGCTTACCAGGACTCGTGAACCG 630 341 158 Antisense
GCTCACTCAACAGTCAGCAACACTT 380 301 192 Antisense
GCAACACTTTCTGGAGCTCAATTCG 566 319 208 Antisense
GCGACGTCAGCATTTGACAACTGTA 69 289 274 Antisense
ACGTCATCAGCGGAATCTTCAACTG 304 91 364 Antisense
GGACGGAGCAAGTCGTTGCACAATG 145 525 394 Antisense
CAATGTGGCAACGCGTGTACACTCT 204 183 414 Antisense
Sequence Source Affymetrix Proprietary Database