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[179066_at]

Description ZK792.8 /REP_DB=WormBase Gene ID /WP=CE24740 /TR=Q9U1N6 /GB=CAB54515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 41      4grp_total > 47      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 400.3
(3)
P 		204.7
(-1.8)
P 		156.9
(-3)
P 		283.6
(0.1)
P 		243
B 353.9
(3)
P 		211.2
(-1.2)
P 		151.8
(-3)
P 		184.2
(-2)
P 		202
C 441
(3)
P 		208.5
(-2.3)
P 		222.9
(-2)
P 		177.7
(-3)
P 		263
avr 398.4
(3) 		208.1
(-2.2) 		177.2
(-3) 		215.2
(-2) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 221.2
(-1.1)
P 		303.5
(1.9)
P 		274.2
(0.8)
P 		333.5
(3)
P 		193
(-2.1)
P 		169.7
(-3)
P 		164
B 265.9
(2.1)
P 		244.2
(0.8)
P 		280.8
(3)
P 		239.5
(0.5)
P 		228.3
(-0.2)
P 		182.5
(-3)
P 		98
C 259.3
(-0)
P 		264.2
(0.3)
P 		292.5
(1.9)
P 		312.3
(3)
P 		237.7
(-1.2)
P 		206.7
(-3)
P 		106
avr 248.8
(0.4) 		270.6
(1.6) 		282.5
(2.3) 		295.1
(3) 		219.7
(-1.2) 		186.3
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 145.8
(3)
P 		44.4
(-2.8)
P 		41
(-3)
P 		41.5
(-3)
P 		105
B 112.8
(3)
P 		52.2
(-1.7)
P 		35.2
(-3)
P 		39.3
(-2.7)
P 		78
C 146
(3)
P 		59.9
(-1.5)
P 		77.7
(-0.5)
P 		30
(-3)
P 		116
avr 134.9
(3) 		52.2
(-2.1) 		51.3
(-2.1) 		36.9
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 40.8
(-3)
P 		107.9
(3)
P 		59.7
(-1.3)
P 		84.6
(0.9)
P 		58.2
(-1.4)
P 		41.3
(-3)
P 		67
B 92.5
(2.9)
P 		81.3
(0.7)
P 		68.2
(-2)
P 		63.4
(-3)
P 		92.8
(3)
P 		68.1
(-2)
P 		29
C 96.1
(3)
P 		80.6
(0.2)
P 		74.4
(-0.9)
P 		62.8
(-3)
P 		76.9
(-0.5)
P 		69.2
(-1.8)
P 		33
avr 76.5
(0.4) 		89.9
(3) 		67.4
(-1.4) 		70.3
(-0.9) 		76
(0.3) 		59.5
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8873
Sequence Type Exemplar sequence
Representative Public ID ZK792.8 NCBI
Target Description ZK792.8 /REP_DB=WormBase Gene ID /WP=CE24740 /TR=Q9U1N6 /GB=CAB54515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069807 NCBI Caenorhabditis elegans ZK792.8 (ZK792.8) mRNA, complete cds. 11/11 A 
SNAP00000023869 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11666252:11671371:1 9/11 None
GENEFINDER00000023879 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11666302:11675428:1 11/11 None
ZK792.8 ENSEMBL cdna:known chromosome:CEL140:IV:11668005:11671460:1 gene:ZK792.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11668025-11671377(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK792.8
Entrez Gene 3565022 Entrez gene
SwissProt Q9U1N6 EMBL-EBI
WormBase CE24740 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1593220_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFA.19031.1.S1_S_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFA.19884.1.S1_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFAAFFX.28602.1.S1_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFAAFFX.28602.1.S1_S_AT similar to APG4 autophagy 4 homolog C cfa
CHICKEN:GGAAFFX.6952.1.S1_AT similar to APG4 autophagy 4 homolog C; autophagin-3; AUT-like 1, cysteine endopeptidase (S. cerevisiae); AUT (S. cerevisiae)-like 1, cysteine endopeptidase; AUT-like 1, cysteine endopeptidase (S. cerevisiae) gga
HU35KSUBC:RC_AA236684_AT ATG4 autophagy related 4 homolog C (S. cerevisiae) hs
HG-U95C:63560_AT ATG4 autophagy related 4 homolog C (S. cerevisiae) hs
MG-U74CV2:136769_F_AT autophagy-related 4C (yeast) mm
MG-U74CV2:136770_R_AT autophagy-related 4C (yeast) mm
MOE430B:1434014_AT autophagy-related 4C (yeast) mm
MOUSE430_2:1434014_AT autophagy-related 4C (yeast) mm
MOE430B:1441440_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
MOUSE430_2:1441440_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
MOE430B:1440800_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
MOUSE430_2:1440800_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
Protein Similarities
Method ID Description E-Value
blast CAB54515 Hypothetical protein ZK792.8 [Caenorhabditis elegans] ref|NP_502208.1| ZK792.8 [Caenorhabditis elegans] 0.0
blast CAA92644 Hypothetical protein ZK792.1a [Caenorhabditis elegans] emb|CAA92636.2| Hypothetical protein ZK792.1a [Caenorhabditis elegans] ref|NP_502206.1| ZK792.1a [Caenorhabditis elegans] 0.0
blast T27993 hypothetical protein ZK792.2 - Caenorhabditis elegans 0.0
blast CAE62074 Hypothetical protein CBG06097 [Caenorhabditis briggsae] 1.0E-161
blast CAE62075 Hypothetical protein CBG06098 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023879 5 1086-1108,1165-1187,1248-1270,1277-1299,1335-1357
Sequence
Target Sequence 
>C. ELEGANS:179066_AT
catgcttctatcaatcgatggacgggttcatattcgagatattgaagttgaaacaaaaaa
ttggatgaaaaagttgatactggtgattgttgtaagactaggagctgctgaattgaaccc
gatctatgttccgcacttgatgcgcctttttgcaatggaatcatgcctaggaattaccgg
aggacgacctgatcactcgtcttggtttgtgggatattatggagatcaaataatctatct
ggatccacatgttgctcatgagtatattccaattgatatcaatcccaatacaaacgtagt
ggacagtgatagtaagaaagcaaaaaagtgcccggaaaaaagttatcactgtcgtttact
ctcgaaaatgcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCTTCTATCAATCGATGGACGG 344 209 951 Antisense
GATGGACGGGTTCATATTCGAGATA 586 405 967 Antisense
GAGCTGCTGAATTGAACCCGATCTA 140 387 1052 Antisense
CGATCTATGTTCCGCACTTGATGCG 4 249 1070 Antisense
GCACTTGATGCGCCTTTTTGCAATG 485 315 1083 Antisense
GGAATCATGCCTAGGAATTACCGGA 622 531 1107 Antisense
TTACCGGAGGACGACCTGATCACTC 144 683 1124 Antisense
ACCTGATCACTCGTCTTGGTTTGTG 253 89 1137 Antisense
CTGGATCCACATGTTGCTCATGAGT 464 241 1189 Antisense
AAGTTATCACTGTCGTTTACTCTCG 21 157 1290 Antisense
GTCGTTTACTCTCGAAAATGCACTT 599 473 1301 Antisense
Sequence Source Affymetrix Proprietary Database