[Home] | [Total List]

[179065_s_at]

Description T23B5.1 /REP_DB=WormBase Gene ID /WP=CE18281 /TR=O02325 /GB=CAB07676.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 83      6grp_total > 77      4grp_total > 61      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 498
(3)
P 		387.4
(0.8)
P 		424
(1.5)
P 		201.2
(-3)
P 		297
B 495.8
(3)
P 		367.4
(0.7)
P 		436
(1.9)
P 		159.1
(-3)
P 		337
C 519.3
(3)
P 		392.1
(0.5)
P 		513.9
(2.9)
P 		217.7
(-3)
P 		302
avr 504.4
(3) 		382.3
(0.6) 		458
(2.1) 		192.7
(-3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 376.4
(-3)
P 		419.2
(-2)
P 		447.2
(-1.3)
P 		432.1
(-1.6)
P 		449.3
(-1.2)
P 		622.4
(3)
P 		246
B 484.8
(-0.9)
P 		447.7
(-1.8)
P 		529.6
(0.2)
P 		401.3
(-3)
P 		491.6
(-0.7)
P 		640.7
(3)
P 		239
C 452.8
(-1.8)
P 		493.1
(-1.1)
P 		380.4
(-3)
P 		528.2
(-0.5)
P 		468.7
(-1.5)
P 		728.3
(3)
P 		348
avr 438
(-3) 		453.3
(-2.6) 		452.4
(-2.6) 		453.9
(-2.6) 		469.9
(-2.2) 		663.8
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 181.3
(3)
P 		84.1
(-0.8)
P 		110.8
(0.2)
P 		29.4
(-3)
P 		152
B 158.1
(3)
P 		90.7
(-0.3)
P 		101
(0.2)
P 		33.9
(-3)
P 		124
C 171.9
(2.7)
P 		112.7
(0.2)
P 		179.1
(3)
P 		36.7
(-3)
P 		142
avr 170.4
(3) 		95.8
(-0.3) 		130.3
(1.2) 		33.3
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 69.4
(-3)
P 		149.1
(2.8)
P 		97.4
(-1)
P 		109.6
(-0.1)
P 		135.6
(1.8)
P 		151.5
(3)
P 		82
B 168.7
(-0.2)
P 		149
(-1.1)
P 		128.6
(-2)
P 		106.3
(-3)
P 		199.7
(1.2)
P 		238.9
(3)
P 		133
C 167.8
(-0.1)
P 		150.5
(-0.8)
P 		96.8
(-3)
P 		106.2
(-2.6)
P 		151.7
(-0.8)
P 		243.8
(3)
P 		147
avr 135.3
(-1.4) 		149.5
(-0.6) 		107.6
(-3) 		107.4
(-3) 		162.3
(0.2) 		211.4
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179065_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9380
Sequence Type Exemplar sequence
Representative Public ID T23B5.1 NCBI
Target Description T23B5.1 /REP_DB=WormBase Gene ID /WP=CE18281 /TR=O02325 /GB=CAB07676.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070022 NCBI Caenorhabditis elegans T23B5.1 (T23B5.1) mRNA, complete cds. 11/11 A 
SNAP00000002831 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12677769:12684349:-1 11/11 None
GENEFINDER00000002840 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12677769:12684349:-1 11/11 None
T23B5.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:12677377:12684349:-1 gene:T23B5.1 11/11 A 
T23B5.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12677377:12684351:-1 gene:T23B5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12677774-12684355(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B5.1
Entrez Gene 178221 Entrez gene
SwissProt O02325 EMBL-EBI
WormBase CE18281 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07676 Hypothetical protein T23B5.1 [Caenorhabditis elegans] ref|NP_502423.1| T23B5.1 [Caenorhabditis elegans] 0.0
blast CAE59993 Hypothetical protein CBG03486 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179065_S_AT
tccagctcagtgtgtgcttaatactgtggaaagccaaacgcctataaggcatcttattac
taacttctgtcgctacgacggtacattggatcaagagacattcttccgaatagaagaatt
cgttggattccgagatcacgttcaaaagattgttccaacaaaattccgtattcttggaca
tctcttctattcagatagagttcatttcgatgctcgaccagatccttcagctcattgtca
agtcgatttgagtactgttcgaagttttaatcttcgagagatgcgtgatattagattaac
tcaacgagaagatattgtgatggcttcgaaggaattcgtgttatacgactttaatattag
cgctgaaaagttccgacaggacacatatatcactgtaacacaggacgttacggttcaacc
aactcgccccatcgccgacggtgtcatctatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGCTCAGTGTGTGCTTAATACT 338 589 1455 Antisense
CTAACTTCTGTCGCTACGACGGTAC 249 225 1514 Antisense
GCTACGACGGTACATTGGATCAAGA 580 299 1526 Antisense
GGATCAAGAGACATTCTTCCGAATA 230 511 1542 Antisense
GTTGGATTCCGAGATCACGTTCAAA 493 435 1576 Antisense
GTATTCTTGGACATCTCTTCTATTC 415 453 1622 Antisense
GAGTTCATTTCGATGCTCGACCAGA 222 399 1652 Antisense
AGATCCTTCAGCTCATTGTCAAGTC 232 67 1674 Antisense
ATATTAGCGCTGAAAAGTTCCGACA 333 19 1808 Antisense
GTTCCGACAGGACACATATATCACT 554 441 1824 Antisense
CCATCGCCGACGGTGTCATCTATGA 635 271 1883 Antisense
Sequence Source Affymetrix Proprietary Database