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[179063_at]

Description C55A1.1 /REP_DB=WormBase Gene ID /WP=CE08987 /TR=O17711 /GB=CAB04005.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 28.3
(-1.8)
A 		11
(-3)
A 		17.7
(-2.5)
A 		98.4
(3)
A 		87
B 30.9
(0.7)
A 		7.9
(-3)
A 		22.3
(-0.7)
A 		45
(3)
A 		37
C 16.9
(-2.7)
A 		32.8
(-2.2)
A 		5
(-3)
A 		212
(3)
A 		207
avr 25.4
(-2.4) 		17.2
(-2.9) 		15
(-3) 		118.5
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 31.8
(3)
A 		19.2
(0.2)
A 		24.6
(1.4)
A 		5.2
(-3)
A 		15.7
(-0.6)
A 		9.3
(-2.1)
A 		27
B 18.7
(3)
A 		7.5
(-2.4)
A 		9.9
(-1.3)
A 		6.3
(-3)
A 		13.7
(0.6)
A 		8.1
(-2.1)
A 		12
C 8
(-2.5)
A 		28
(3)
A 		6
(-3)
A 		7.2
(-2.7)
A 		6.6
(-2.8)
A 		7.3
(-2.6)
A 		22
avr 19.5
(3) 		18.2
(2.4) 		13.5
(0.3) 		6.2
(-3) 		12
(-0.4) 		8.2
(-2.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 10.3
(1)
A 		2.4
(-3)
A 		4.6
(-1.9)
A 		14.4
(3)
A 		12
B 9.8
(3)
A 		1.9
(-3)
A 		5.2
(-0.5)
A 		9.6
(2.8)
A 		8
C 5.6
(-2.3)
A 		9.4
(-1.6)
A 		1.7
(-3)
A 		35.7
(3)
A 		34
avr 8.6
(-1.2) 		4.6
(-2.7) 		3.8
(-3) 		19.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.9
(2)
A 		6.8
(3)
A 		5.3
(1.4)
A 		1.3
(-3)
A 		4.7
(0.7)
A 		2.3
(-1.9)
A 		6
B 6.5
(3)
A 		2.5
(-2)
A 		2.4
(-2.1)
A 		1.7
(-3)
A 		5.6
(1.9)
A 		3
(-1.4)
A 		5
C 2.9
(-1.8)
A 		8.6
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		2.1
(-2.5)
A 		2.4
(-2.2)
A 		7
avr 5.1
(1.8) 		6
(3) 		3.1
(-0.9) 		1.5
(-3) 		4.1
(0.5) 		2.6
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13605
Sequence Type Exemplar sequence
Representative Public ID C55A1.1 NCBI
Target Description C55A1.1 /REP_DB=WormBase Gene ID /WP=CE08987 /TR=O17711 /GB=CAB04005.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074484 NCBI Caenorhabditis elegans C55A1.1 (C55A1.1) mRNA, complete cds. 11/11 None
SNAP00000022790 ENSEMBL cdna:SNAP chromosome:CEL140:V:15624402:15625661:1 10/11 None
GENEFINDER00000022806 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15624402:15625661:1 11/11 None
C55A1.1 ENSEMBL cdna:known chromosome:CEL140:V:15624402:15625661:1 gene:C55A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15624401-15625661(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55A1.1
Entrez Gene 183822 Entrez gene
WormBase CE36430 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04005 Hypothetical protein C55A1.1 [Caenorhabditis elegans] ref|NP_506885.2| C55A1.1 [Caenorhabditis elegans] 1.0E-149
blast CAB04005 Hypothetical protein C55A1.1 [Caenorhabditis elegans] ref|NP_506885.2| C55A1.1 [Caenorhabditis elegans] 1.0E-148
blast CAA20950 Hypothetical protein Y102A5C.28 [Caenorhabditis elegans] ref|NP_507300.1| Seven TM Receptor family member (str-217) [Caenorhabditis elegans] 1.0E-122
blast CAA20950 Hypothetical protein Y102A5C.28 [Caenorhabditis elegans] ref|NP_507300.1| Seven TM Receptor family member (str-217) [Caenorhabditis elegans] 1.0E-119
blast CAB04005 Hypothetical protein C55A1.1 [Caenorhabditis elegans] ref|NP_506885.2| C55A1.1 [Caenorhabditis elegans] 1.0E-117
blast CAA20950 Hypothetical protein Y102A5C.28 [Caenorhabditis elegans] ref|NP_507300.1| Seven TM Receptor family member (str-217) [Caenorhabditis elegans] 2.0E-95
blast CAE71647 Hypothetical protein CBG18618 [Caenorhabditis briggsae] 5.0E-87
blast CAE71647 Hypothetical protein CBG18618 [Caenorhabditis briggsae] 3.0E-86
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506885.2 5 52-74,95-117,165-187,208-230,245-264
C55A1.1 5 52-74,95-117,165-187,208-230,245-264
SNAP00000022790 4 52-74,95-117,161-183,190-212
GENEFINDER00000022806 5 52-74,95-117,169-191,211-233,248-267
Sequence
Target Sequence 
>C. ELEGANS:179063_AT
tactatgcatttttcggcttctccatgggcatgtttgttatcatctttgcctaccgatca
tttgtatccacaggaaacacaattctcaaaaaatttaaaggattaaaaatgctcacctgg
tttgcatttcccatattctacgcacttgtatggcttttagtggcatggataccgcttgct
ccgtttccagagatggacaacgtcgtgcgagactttttgtttgatgcggtgaatatgacg
gtggacgaggtcgcttatactggaccactgttctattcaacaattgataattcattacga
ttttctgcaattttaccagctgctctgcaatgggcctcctctctttttctggtaatcttt
tttggagtacgttgttatttatacattgggaaattggtggatctcacggatcttcgatca
atacggttgagacatcttcaaaagcaactgttcgtcgccttggtgtttcaggcaaccgtt
ccactcattctaatgcatatcccagtcactgtgctatacacatgctgcgtgttcaacatt
gtgttcgatacgttctcagttgccacgacaattgcattatttccagcgatcgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTATGCATTTTTCGGCTTCTCCA 502 645 214 Antisense
TTTGTTATCATCTTTGCCTACCGAT 353 667 247 Antisense
GCCTACCGATCATTTGTATCCACAG 572 281 262 Antisense
AATGCTCACCTGGTTTGCATTTCCC 166 167 321 Antisense
TGCATTTCCCATATTCTACGCACTT 206 579 336 Antisense
ATACTGGACCACTGTTCTATTCAAC 271 23 470 Antisense
GCAATTTTACCAGCTGCTCTGCAAT 379 323 520 Antisense
TGTTCGTCGCCTTGGTGTTTCAGGC 123 563 662 Antisense
GCATATCCCAGTCACTGTGCTATAC 7 309 708 Antisense
TGTGTTCGATACGTTCTCAGTTGCC 637 555 753 Antisense
ATTGCATTATTTCCAGCGATCGACC 379 5 784 Antisense
Sequence Source Affymetrix Proprietary Database