[Home] | [Total List]

[179062_s_at]

Description F14D7.2 /REP_DB=WormBase Gene ID /WP=CE09380 /TR=Q19452 /GB=CAB01156.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 7.2
(-2.3)
A 		5
(-3)
A 		11.9
(-0.9)
A 		25
(3)
A 		20
B 7.3
(-2.5)
A 		4.7
(-3)
A 		9.9
(-2)
A 		36.7
(3)
A 		32
C 8
(-2.8)
A 		4.4
(-3)
A 		5.2
(-2.9)
A 		95.2
(3)
A 		91
avr 7.5
(-2.6) 		4.7
(-3) 		9
(-2.5) 		52.3
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 7.1
(-2.9)
A 		3.6
(-3)
A 		5.2
(-2.9)
A 		5.9
(-2.9)
A 		157.1
(2.3)
A 		176.2
(3)
P 		173
B 6.9
(-2.9)
A 		6.5
(-2.9)
A 		3.2
(-3)
A 		8.5
(-2.9)
A 		172.3
(0.5)
A 		291.5
(3)
P 		288
C 3.6
(-3)
A 		9.7
(-2.8)
A 		12.9
(-2.7)
A 		3.1
(-3)
A 		121.4
(0.4)
A 		210.6
(3)
P 		208
avr 5.9
(-3) 		6.6
(-3) 		7.1
(-3) 		5.8
(-3) 		150.3
(0.9) 		226.1
(3) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.6
(0.5)
A 		1.1
(-3)
A 		3.1
(1.6)
A 		3.7
(3)
A 		3
B 2.3
(-2)
A 		1.2
(-3)
A 		2.3
(-2)
A 		7.8
(3)
A 		7
C 2.6
(-2.5)
A 		1.3
(-3)
A 		1.8
(-2.8)
A 		16.1
(3)
A 		15
avr 2.5
(-2) 		1.2
(-3) 		2.4
(-2.1) 		9.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.3
(-3)
A 		1.1
(-3)
A 		1.5
(-2.9)
A 		47.4
(3)
A 		42.9
(2.4)
P 		46
B 2.4
(-2.9)
A 		2.2
(-2.9)
A 		0.8
(-3)
A 		2.3
(-2.9)
A 		70
(0.8)
A 		108.7
(3)
P 		108
C 1.3
(-2.9)
A 		3
(-2.8)
A 		3.3
(-2.8)
A 		0.6
(-3)
A 		39.3
(0.3)
A 		70.5
(3)
P 		70
avr 1.7
(-3) 		2.2
(-2.9) 		1.7
(-3) 		1.5
(-3) 		52.2
(1.2) 		74
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14454
Sequence Type Exemplar sequence
Representative Public ID F14D7.2 NCBI
Target Description F14D7.2 /REP_DB=WormBase Gene ID /WP=CE09380 /TR=Q19452 /GB=CAB01156.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074139 NCBI Caenorhabditis elegans F14D7.2 (F14D7.2) mRNA, complete cds. 11/11 None
SNAP00000017354 ENSEMBL cdna:SNAP chromosome:CEL140:V:14294629:14296294:-1 11/11 None
GENEFINDER00000017373 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14294629:14296294:-1 11/11 None
F14D7.2 ENSEMBL cdna:known chromosome:CEL140:V:14294558:14296296:-1 gene:F14D7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14294628-14296294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14D7.2
Entrez Gene 179929 Entrez gene
SwissProt Q19452 EMBL-EBI
WormBase CE09380 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01156 Hypothetical protein F14D7.2 [Caenorhabditis elegans] ref|NP_506540.1| F14D7.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179062_S_AT
tcgggagcatcttcacacacaagagaatctgacgagacaccagacatatccgcagatgga
gcaaaaaaattagataatatcacagaggaatctggtactccggaagaagagcttatgtct
ggtcgtgacagcgaagacgaaggacttcgtagaaagcgcccaaaattacaagttgaaggc
aaagatgtcaaaagatcagattgttactctccttcggaatgctcgacacaacccagctca
ggttcttcaacggctcttattgtcccgacgaaagccgggaaatcaagtgatgacctccga
aaggcacgtgctgatagaaaagctgaacaaaaggctgagaaagcgcggaaaaggccatcg
aatccgtctgaaaagaaactcacttcagcggaaaagttaatggccgccagtaatattccc
aaagatgtgagcccagcaacaaatgctgtacttttggataaacttcatgataacatggct
ggatacggtaaggtcgacgatgtcgatgaagatgctggagatggtcaaggtagcagtgac
aaaaataacaaagatgacgaagacgacgacgattcgatctttggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGGAGCATCTTCACACACAAGAG 579 603 757 Antisense
TGACGAGACACCAGACATATCCGCA 676 565 786 Antisense
GAAGGACTTCGTAGAAAGCGCCCAA 121 335 895 Antisense
AAGATCAGATTGTTACTCTCCTTCG 677 155 948 Antisense
TCTCCTTCGGAATGCTCGACACAAC 203 611 964 Antisense
TCTTCAACGGCTCTTATTGTCCCGA 551 611 1000 Antisense
GTGATGACCTCCGAAAGGCACGTGC 4 485 1043 Antisense
GAAAAGGCCATCGAATCCGTCTGAA 6 355 1104 Antisense
TTAATGGCCGCCAGTAATATTCCCA 637 557 1153 Antisense
TTCCCAAAGATGTGAGCCCAGCAAC 647 695 1172 Antisense
ACGACGACGATTCGATCTTTGGCAA 622 91 1319 Antisense
Sequence Source Affymetrix Proprietary Database