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[179061_at]

Description C25D7.8 /REP_DB=WormBase Gene ID /WP=CE08394 /TR=Q9XVR6 /GB=CAB02772.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 88      6grp_total > 96      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 434
1 2 3 4 range
A 1121.6
(-0)
P 		922.9
(-3)
P 		1322
(3)
P 		1212.5
(1.4)
P 		399
B 1039.9
(-3)
P 		1156.4
(-0.8)
P 		1357.2
(3)
P 		1333.2
(2.5)
P 		317
C 1063.2
(-3)
P 		1107.6
(-2)
P 		1331.3
(3)
P 		1220
(0.5)
P 		268
avr 1074.9
(-2.7) 		1062.3
(-3) 		1336.8
(3) 		1255.2
(1.2) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 993
1 2 3 4 5 6 range
A 996.8
(-3)
P 		1127.7
(-2)
P 		1142.3
(-1.9)
P 		1465
(0.6)
P 		1464.2
(0.5)
P 		1786.8
(3)
P 		790
B 937.7
(-3)
P 		988.8
(-2.6)
P 		1198.3
(-0.7)
P 		1327.9
(0.4)
P 		1545.5
(2.3)
P 		1632
(3)
P 		694
C 1085
(-2.1)
P 		944.4
(-3)
P 		1358.5
(-0.5)
P 		1431
(-0)
P 		1554.9
(0.7)
P 		1930.2
(3)
P 		986
avr 1006.5
(-3) 		1020.3
(-2.9) 		1233
(-1.2) 		1408
(0.1) 		1521.5
(1) 		1783
(3) 		777
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 408.4
(3)
P 		200.3
(-2.4)
P 		345.6
(1.4)
P 		177.5
(-3)
P 		231
B 331.6
(3)
P 		285.6
(-2.8)
P 		314.5
(0.8)
P 		284.1
(-3)
P 		48
C 351.9
(0.4)
P 		318.4
(-0.4)
P 		464
(3)
P 		205.7
(-3)
P 		258
avr 364
(2.6) 		268.1
(-1.2) 		374.7
(3) 		222.4
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 183.8
(-3)
P 		401.1
(2.1)
P 		248.8
(-1.5)
P 		371.6
(1.4)
P 		441.8
(3)
P 		435
(2.8)
P 		258
B 326.3
(-2.4)
P 		329.1
(-2.3)
P 		291
(-3)
P 		351.7
(-1.9)
P 		627.9
(3)
P 		608.6
(2.7)
P 		337
C 402.2
(-1.1)
P 		288.2
(-3)
P 		345.8
(-2)
P 		287.8
(-3)
P 		503.1
(0.6)
P 		646.1
(3)
P 		358
avr 304.1
(-2.8) 		339.5
(-2) 		295.2
(-3) 		337
(-2.1) 		524.3
(2.1) 		563.2
(3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14636
Sequence Type Exemplar sequence
Representative Public ID C25D7.8 NCBI
Target Description C25D7.8 /REP_DB=WormBase Gene ID /WP=CE08394 /TR=Q9XVR6 /GB=CAB02772.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074308 NCBI Caenorhabditis elegans C25D7.8 (C25D7.8) mRNA, complete cds. 11/11 None
SNAP00000019713 ENSEMBL cdna:SNAP chromosome:CEL140:V:15068138:15069800:1 11/11 None
GENEFINDER00000019724 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15068896:15069800:1 11/11 None
C25D7.8 ENSEMBL cdna:known chromosome:CEL140:V:15068884:15070050:1 gene:C25D7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15068895-15069800(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25D7.8
Entrez Gene 3565820 Entrez gene
SwissProt Q9XVR6 EMBL-EBI
WormBase CE08394 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259587_AT expressed protein at
DROSOPHILA_2:1640358_AT dm
DROSGENOME1:154542_AT dm
HG-U133_PLUS_2:201245_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133A_2:201245_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133A:201245_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133_PLUS_2:201246_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133A_2:201246_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133A:201246_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
U133_X3P:201245_3P_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
HU35KSUBA:D30921_AT OTU domain, ubiquitin aldehyde binding 1 hs
HU35KSUBD:RC_T32046_AT OTU domain, ubiquitin aldehyde binding 1 hs
HU35KSUBD:RC_F09249_AT OTU domain, ubiquitin aldehyde binding 1 hs
U133_X3P:G8923113_3P_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
U133_X3P:HS.108504.0.S1_3P_S_AT OTU domain, ubiquitin aldehyde binding 1 hs
U133_X3P:HS.108504.0.S1_3P_A_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133A_2:38710_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133_PLUS_2:38710_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U133A:38710_AT OTU domain, ubiquitin aldehyde binding 1 hs
HG-U95AV2:38710_AT OTU domain, ubiquitin aldehyde binding 1 hs
MG-U74AV2:94336_AT OTU domain, ubiquitin aldehyde binding 1 mm
MU11KSUBA:AA671904_S_AT OTU domain, ubiquitin aldehyde binding 1 mm
MOE430A:1448817_AT OTU domain, ubiquitin aldehyde binding 1 mm
MOUSE430A_2:1448817_AT OTU domain, ubiquitin aldehyde binding 1 mm
MOUSE430_2:1448817_AT OTU domain, ubiquitin aldehyde binding 1 mm
MOE430A:1417705_AT OTU domain, ubiquitin aldehyde binding 1 mm
MOUSE430A_2:1417705_AT OTU domain, ubiquitin aldehyde binding 1 mm
MOUSE430_2:1417705_AT OTU domain, ubiquitin aldehyde binding 1 mm
MU19KSUBA:TC16808_AT OTU domain, ubiquitin aldehyde binding 1 (Otub1), mRNA mm
MU19KSUBA:TC25277_AT OTU domain, ubiquitin aldehyde binding 1 (Otub1), mRNA mm
RG-U34B:RC_AA944451_AT OTU domain, ubiquitin aldehyde binding 1 (predicted) rn
RAE230A:1399073_AT OTU domain, ubiquitin aldehyde binding 1 (predicted) rn
RAT230_2:1399073_AT OTU domain, ubiquitin aldehyde binding 1 (predicted) rn
RAE230A:1372958_AT OTU domain, ubiquitin aldehyde binding 1 (predicted) rn
RAT230_2:1372958_AT OTU domain, ubiquitin aldehyde binding 1 (predicted) rn
RAE230B:1397208_AT OTU domain, ubiquitin aldehyde binding 1 (predicted) rn
RAT230_2:1397208_AT OTU domain, ubiquitin aldehyde binding 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB02772 Hypothetical protein C25D7.8 [Caenorhabditis elegans] ref|NP_506709.1| C25D7.8 [Caenorhabditis elegans] sp|Q9XVR6|OTUBL_CAEEL Ubiquitin thiolesterase otubain-like protein (Ubiquitin-specific processing protease otubain-like) (Deubiquitinating enzyme otubain-like) 1.0E-163
blast CAE66325 Hypothetical protein CBG11576 [Caenorhabditis briggsae] 3.0E-96
blast CAE66325 Hypothetical protein CBG11576 [Caenorhabditis briggsae] 5.0E-96
blast EAA05859 ENSANGP00000005478 [Anopheles gambiae str. PEST] ref|XP_310189.2| ENSANGP00000005478 [Anopheles gambiae str. PEST] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:179061_AT
gagatccgctacattcgtggagacggaaactgcttctatcgtgcaattctcgttggactt
attgagataatgctgaaagatcgagccagactcgaaaaattcattgcgagtagcagggat
tggactcggacacttgttgaacttggatttccggattggacctgcacagatttctgtgac
ttctttatcgaattccttgagaaaatccacagtggagtgcataccgaggaagctgtttac
acgattttgaatgatgatggctctgctaattatattctcatgttcttccgtctcataact
tcagcatttttgaaacaaaactcagaagaatatgctccattcattgatgagggaatgaca
gtggctcaatattgcgaacaggaaatcgagccaatgtggaaagatgccgatcatctggca
attaattctttgatcaaagccgccggcacaagagttcgcatcgaatacatggaccgtact
gctgctccgaacggtggttggcattacgacattccatctgacgatcaacaaattgctccg
gagatcacacttctctatcgtccaggccactacgatgtcatttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCCGCTACATTCGTGGAGACG 239 397 244 Antisense
ACTGCTTCTATCGTGCAATTCTCGT 567 97 272 Antisense
GTAGCAGGGATTGGACTCGGACACT 625 453 353 Antisense
TGGATTTCCGGATTGGACCTGCACA 428 549 387 Antisense
AATTATATTCTCATGTTCTTCCGTC 8 177 511 Antisense
TTCCGTCTCATAACTTCAGCATTTT 202 699 529 Antisense
CAAAGCCGCCGGCACAAGAGTTCGC 597 189 678 Antisense
CGAATACATGGACCGTACTGCTGCT 7 253 705 Antisense
GCATTACGACATTCCATCTGACGAT 650 307 744 Antisense
AATTGCTCCGGAGATCACACTTCTC 136 179 774 Antisense
TCCAGGCCACTACGATGTCATTTAC 566 587 804 Antisense
Sequence Source Affymetrix Proprietary Database