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[179060_at]

Description C33G3.6 /REP_DB=WormBase Gene ID /WP=CE08562 /TR=Q93321 /GB=CAB01734.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 12      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 74.6
(-3)
A 		108.7
(-1.2)
A 		74.6
(-3)
A 		188
(3)
A 		113
B 123
(1.1)
A 		97.6
(-0.4)
A 		50.5
(-3)
A 		157.9
(3)
P 		107
C 122.5
(-0.4)
A 		69.6
(-3)
A 		87.7
(-2.1)
A 		190.5
(3)
A 		121
avr 106.7
(-1) 		92
(-1.8) 		70.9
(-3) 		178.8
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 52.4
(-3)
A 		150.5
(1.9)
A 		170.4
(2.9)
M 		171.5
(3)
A 		114.3
(0.1)
A 		102
(-0.5)
A 		119
B 101
(-3)
A 		137.1
(-1.5)
A 		250
(3)
A 		140.5
(-1.4)
M 		145.2
(-1.2)
M 		130.9
(-1.8)
A 		149
C 85.8
(-3)
A 		209.2
(2.3)
M 		188
(1.4)
A 		226
(3)
A 		110.1
(-2)
P 		111
(-1.9)
P 		140
avr 79.7
(-3) 		165.6
(1.2) 		202.8
(3) 		179.3
(1.9) 		123.2
(-0.9) 		114.6
(-1.3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 27.2
(2.8)
A 		23.6
(0.1)
A 		19.5
(-3)
A 		27.5
(3)
A 		8
B 39.2
(3)
A 		24.1
(-0.3)
A 		11.7
(-3)
A 		33.6
(1.8)
P 		28
C 40.5
(3)
A 		20
(-3)
A 		30.6
(0.1)
A 		32.1
(0.5)
A 		21
avr 35.6
(3) 		22.6
(-2.2) 		20.6
(-3) 		31.1
(1.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 9.7
(-3)
A 		53.5
(3)
A 		37.1
(0.8)
M 		43.5
(1.6)
A 		34.5
(0.4)
A 		24.8
(-0.9)
A 		44
B 35.2
(-3)
A 		45.6
(-0.6)
A 		60.7
(3)
A 		37.2
(-2.5)
M 		59
(2.6)
M 		48.8
(0.2)
A 		26
C 31.8
(-3)
A 		63.8
(3)
M 		47.9
(0)
A 		45.5
(-0.4)
A 		35.6
(-2.3)
P 		37.2
(-2)
P 		32
avr 25.6
(-3) 		54.3
(3) 		48.6
(1.8) 		42.1
(0.4) 		43
(0.6) 		36.9
(-0.6) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17745
Sequence Type Exemplar sequence
Representative Public ID C33G3.6 NCBI
Target Description C33G3.6 /REP_DB=WormBase Gene ID /WP=CE08562 /TR=Q93321 /GB=CAB01734.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077943(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077943 NCBI Caenorhabditis elegans C33G3.6 (C33G3.6) mRNA, complete cds. 10/11 None
GENEFINDER00000041086 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14080588:14084235:-1 10/11 None
C33G3.6.1 ENSEMBL cdna:known chromosome:CEL140:X:14080310:14084245:-1 gene:C33G3.6 10/11 None
C33G3.6.2 ENSEMBL cdna:known chromosome:CEL140:X:14080310:14084238:-1 gene:C33G3.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041083 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14080325-14084235(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33G3.6
Entrez Gene 181518 Entrez gene
SwissProt Q93321 EMBL-EBI
WormBase CE31432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01734 Hypothetical protein C33G3.6 [Caenorhabditis elegans] ref|NP_510344.2| C33G3.6 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179060_AT
accagcagtctcacgatcagaattcaactatttccagtgtggaatacaaccaataccagc
aaaaggcgggcagttatggacgaaactaccatccttacaataatcatcatcaacagtaca
acccatacaatcaggtcctcgaaaactcaagttcggagtataatccacgccagcaggagt
ctagaaatgccagttatatcaacatctcaacatttgatggatataaccaccatcaatata
atggacatcatgaacgggcaaactcatacaatccataccctgaaaactccagaaactttt
cacaccaatcgcagcatagcggacgtcaagctgagcagccgtacaactcgtatgatcaat
ttttgacgaatggaagaaccgagtcatatggaaacaccaaccatcagtctgaatcactgg
aaaaatcaaattacgactatagaaatactacaattttgaggcttctaatcgataagaaaa
cggaaagctacgagatagcacgccaaattattgattatctcgagctttgcaaacgcaaaa
atgtcagagttacggtagtctttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGCAGTCTCACGATCAGAATTC 158 87 1058 Antisense
GACGAAACTACCATCCTTACAATAA 391 337 1136 Antisense
ACAACCCATACAATCAGGTCCTCGA 237 113 1175 Antisense
TAATCCACGCCAGCAGGAGTCTAGA 249 631 1218 Antisense
GCAAACTCATACAATCCATACCCTG 279 319 1315 Antisense
TTTTCACACCAATCGCAGCATAGCG 148 677 1354 Antisense
ATAGCGGACGTCAAGCTGAGCAGCC 574 21 1373 Antisense
GAGCAGCCGTACAACTCGTATGATC 623 387 1390 Antisense
GAAACACCAACCATCAGTCTGAATC 26 357 1448 Antisense
GATTATCTCGAGCTTTGCAAACGCA 98 431 1570 Antisense
GTCAGAGTTACGGTAGTCTTTCTCA 10 465 1600 Antisense
Sequence Source Affymetrix Proprietary Database