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[179059_at]

Description ZC518.4 /REP_DB=WormBase Gene ID /WP=CE06604 /TR=Q23367 /GB=CAA92987.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 41.1
(-2.8)
A 		93.8
(3)
A 		39
(-3)
A 		57.3
(-1)
A 		55
B 20.3
(-2.1)
A 		87.1
(3)
A 		63.9
(1.2)
A 		8.7
(-3)
A 		78
C 43.2
(-3)
A 		65.2
(-0.4)
A 		47.9
(-2.4)
A 		94.2
(3)
A 		51
avr 34.9
(-3) 		82
(3) 		50.3
(-1) 		53.4
(-0.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 36.6
(3)
A 		20.4
(-0.8)
A 		31.6
(1.8)
A 		12.1
(-2.7)
A 		29.2
(1.3)
A 		11
(-3)
A 		26
B 9.3
(-2.5)
A 		17.8
(-1)
A 		29.5
(1.1)
A 		40.5
(3)
A 		27.2
(0.7)
A 		6.4
(-3)
A 		34
C 33.6
(3)
A 		27.3
(1.7)
A 		13.7
(-1)
A 		12
(-1.3)
A 		3.7
(-3)
A 		24.5
(1.2)
A 		30
avr 26.5
(3) 		21.8
(0.7) 		24.9
(2.2) 		21.5
(0.6) 		20
(-0.1) 		14
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15
(0.3)
A 		20.4
(3)
A 		10.2
(-2.1)
A 		8.4
(-3)
A 		12
B 6.5
(-1.6)
A 		21.5
(3)
A 		14.8
(0.9)
A 		1.9
(-3)
A 		20
C 14.3
(-3)
A 		18.7
(3)
A 		16.7
(0.3)
A 		15.9
(-0.8)
A 		4
avr 11.9
(-1.3) 		20.2
(3) 		13.9
(-0.3) 		8.7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.7
(0.9)
A 		7.3
(1.5)
A 		6.9
(1.1)
A 		3.1
(-2.6)
A 		8.8
(3)
A 		2.7
(-3)
A 		6
B 3.2
(-2.4)
A 		5.9
(-0.6)
A 		7.2
(0.3)
A 		10.7
(2.7)
A 		11.1
(3)
A 		2.4
(-3)
A 		9
C 12.5
(3)
A 		8.3
(0.8)
A 		3.5
(-1.8)
A 		2.4
(-2.4)
A 		1.2
(-3)
A 		8.2
(0.7)
A 		11
avr 7.5
(3) 		7.2
(2.4) 		5.9
(-0.1) 		5.4
(-1.1) 		7
(2) 		4.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9095
Sequence Type Exemplar sequence
Representative Public ID ZC518.4 NCBI
Target Description ZC518.4 /REP_DB=WormBase Gene ID /WP=CE06604 /TR=Q23367 /GB=CAA92987.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069956 NCBI Caenorhabditis elegans ZC518.4 (ZC518.4) mRNA, complete cds. 11/11 None
ZC518.4 ENSEMBL cdna:known chromosome:CEL140:IV:12366843:12367906:-1 gene:ZC518.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12366848-12367912(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC518.4
Entrez Gene 191198 Entrez gene
SwissProt Q23367 EMBL-EBI
WormBase CE06604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92987 Hypothetical protein ZC518.4 [Caenorhabditis elegans] ref|NP_502357.1| ZC518.4 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502357.1 2 10-32,217-239
ZC518.4 2 10-32,217-239
Sequence
Target Sequence 
>C. ELEGANS:179059_AT
gaggctctatatttgatctttccatacaaaaattcccagacacaagcgccatgttcaaac
gaccaatttgttctacgcgccgtcaccacccggtggcctcatccatccatcgactcggac
ggctcgaaaccgtgtgtaaacatatcgtgcaccggagggcaacccaaaacactcttctca
ccgtcgtcaaaacacgtgtctcacaaatcacctggtcaatgcttatccattctaatatca
cttcctgccagtcctcgcgcaatcagtgataccaaaacaatccgactttccaatgtctct
aaactgccaaccatattcacactgaagatgtggaaggatgtgacaccgtccgaaaatggc
gacaaaaacttgttaacgcttaagacatacacacaccatcactaccgtcaagccgtgatg
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTCTATATTTGATCTTTCCAT 649 405 250 Antisense
ACAAGCGCCATGTTCAAACGACCAA 421 111 291 Antisense
CGACTCGGACGGCTCGAAACCGTGT 73 1 360 Antisense
TCTTCTCACCGTCGTCAAAACACGT 505 615 422 Antisense
CACGTGTCTCACAAATCACCTGGTC 476 199 442 Antisense
CATTCTAATATCACTTCCTGCCAGT 216 217 477 Antisense
GTCCTCGCGCAATCAGTGATACCAA 160 477 500 Antisense
GACTTTCCAATGTCTCTAAACTGCC 414 371 533 Antisense
TAAACTGCCAACCATATTCACACTG 303 641 549 Antisense
TTAAGACATACACACACCATCACTA 183 685 629 Antisense
TCACTACCGTCAAGCCGTGATGTCC 37 627 648 Antisense
Sequence Source Affymetrix Proprietary Database