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[179058_at]

Description F25H9.2 /REP_DB=WormBase Gene ID /WP=CE09659 /TR=O01301 /GB=CAB02992.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      6grp_total > 40      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 196.4
(3)
P 		109.6
(-2.3)
A 		98.6
(-3)
P 		153.6
(0.4)
P 		98
B 173.5
(3)
P 		106.3
(-2.9)
A 		119
(-1.8)
P 		105.7
(-3)
P 		68
C 161.8
(2.7)
P 		71.3
(-3)
A 		144.4
(1.6)
M 		166
(3)
P 		95
avr 177.2
(3) 		95.7
(-3) 		120.7
(-1.2) 		141.8
(0.4) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 85.8
(-0.7)
A 		150
(2.7)
P 		142.4
(2.3)
P 		154.8
(3)
M 		43.6
(-3)
A 		68.7
(-1.6)
P 		111
B 125.7
(0.4)
M 		165.6
(2.1)
P 		145
(1.2)
P 		188
(3)
P 		42.3
(-3)
P 		85.4
(-1.2)
P 		146
C 147.3
(1.9)
P 		167.7
(3)
P 		127.4
(0.8)
P 		162
(2.7)
P 		58.4
(-3)
P 		78.6
(-1.9)
P 		109
avr 119.6
(0.6) 		161.1
(2.6) 		138.3
(1.5) 		168.3
(3) 		48.1
(-3) 		77.6
(-1.5) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 71.5
(3)
P 		23.8
(-2.8)
A 		25.8
(-2.6)
P 		22.5
(-3)
P 		49
B 55.3
(3)
P 		26.3
(-2.3)
A 		27.6
(-2.1)
P 		22.5
(-3)
P 		33
C 53.6
(3)
P 		20.5
(-3)
A 		50.3
(2.4)
M 		28
(-1.6)
P 		33
avr 60.1
(3) 		23.5
(-3) 		34.6
(-1.2) 		24.3
(-2.9) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 15.8
(-2.6)
A 		53.3
(3)
P 		31
(-0.3)
P 		39.3
(0.9)
M 		13.1
(-3)
A 		16.7
(-2.5)
P 		40
B 43.7
(1.2)
M 		55.1
(3)
P 		35.2
(-0.2)
P 		49.8
(2.2)
P 		17.2
(-3)
P 		31.8
(-0.7)
P 		38
C 54.6
(3)
P 		51.2
(2.4)
P 		32.4
(-0.7)
P 		32.6
(-0.7)
P 		18.9
(-3)
P 		26.3
(-1.8)
P 		36
avr 38
(0.5) 		53.2
(3) 		32.9
(-0.3) 		40.6
(0.9) 		16.4
(-3) 		24.9
(-1.6) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14350
Sequence Type Exemplar sequence
Representative Public ID F25H9.2 NCBI
Target Description F25H9.2 /REP_DB=WormBase Gene ID /WP=CE09659 /TR=O01301 /GB=CAB02992.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073937 NCBI Caenorhabditis elegans F25H9.2 (F25H9.2) mRNA, complete cds. 11/11 None
SNAP00000006463 ENSEMBL cdna:SNAP chromosome:CEL140:V:13460735:13461859:1 11/11 None
GENEFINDER00000006473 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13460735:13461859:1 11/11 None
F25H9.2 ENSEMBL cdna:known chromosome:CEL140:V:13460735:13462030:1 gene:F25H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13460734-13461859(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F25H9.2
Entrez Gene 179826 Entrez gene
SwissProt O01301 EMBL-EBI
WormBase CE09659 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02992 Hypothetical protein F25H9.2 [Caenorhabditis elegans] ref|NP_506338.1| F25H9.2 [Caenorhabditis elegans] 1.0E-179
blast CAE62586 Hypothetical protein CBG06700 [Caenorhabditis briggsae] 1.0E-116
blast CAA21761 Hypothetical protein Y75B12B.4 [Caenorhabditis elegans] ref|NP_506750.1| Y75B12B.4 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.6E-6
Sequence
Target Sequence 
>C. ELEGANS:179058_AT
gcgaattcatgacttcacagttccccgggataatcttacaaatttaattctaattgtgga
tgggaagaacatttactgcaataaacatattcttgcgatgaactctgaagttttgatgga
acttctattcccagacgaggaccacgatgttaacgaacttcagttatcaaatgatttcga
gtatgaaccgacactacgcattgtcaaagtattttataatgatggcgatgcattgacagg
cgataatgtcgatgagacacttgaatacgcaacaaagttgaaatctgaaaatgctcggca
gcgatgtgaacgttggatcagcaagacgcagttgctgactgcaaagaagaaaatgaagtt
agctgagaagtatgttctggttgagttgcagaatgagtgtgtcgctatgctaaaaacttc
ccagcaagtccaaagactatttgaaaatcctcacgagttcactgacaacgaaatcgttga
actaatggacaaggtcactctttcaatcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAATTCATGACTTCACAGTTCCC 293 289 405 Antisense
GACTTCACAGTTCCCCGGGATAATC 54 369 415 Antisense
GAACTTCTATTCCCAGACGAGGACC 265 349 523 Antisense
GACGAGGACCACGATGTTAACGAAC 463 377 538 Antisense
GAGTATGAACCGACACTACGCATTG 506 399 583 Antisense
GATGGCGATGCATTGACAGGCGATA 158 407 625 Antisense
GCTCGGCAGCGATGTGAACGTTGGA 661 297 697 Antisense
GTGTCGCTATGCTAAAAACTTCCCA 632 483 803 Antisense
AAACTTCCCAGCAAGTCCAAAGACT 548 127 818 Antisense
AAATCCTCACGAGTTCACTGACAAC 228 119 849 Antisense
GGACAAGGTCACTCTTTCAATCGTT 148 525 891 Antisense
Sequence Source Affymetrix Proprietary Database