[Home] | [Total List]

[179057_at]

Description C54C8.6 /REP_DB=WormBase Gene ID /WP=CE08969 /TR=O02233 /GB=CAB05468.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 22      6grp_cgc > 99      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.5
(3)
A 		2.8
(-1.7)
A 		2.2
(-2.5)
A 		1.8
(-3)
A 		5
B 2.4
(-0)
A 		2.3
(-1.5)
A 		2.2
(-3)
A 		2.6
(3)
A 		0
C 3.2
(-1.7)
A 		3.3
(-1.6)
A 		2
(-3)
A 		7.4
(3)
A 		5
avr 4
(3) 		2.8
(-0.8) 		2.1
(-3) 		3.9
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 7
(3)
A 		1.9
(-2.9)
A 		1.8
(-3)
A 		1.8
(-3)
A 		6.9
(2.9)
A 		3.6
(-0.9)
A 		5
B 1.6
(-2.5)
A 		1.5
(-2.8)
A 		2.1
(-1.3)
A 		1.4
(-3)
A 		2.5
(-0.4)
A 		3.9
(3)
A 		3
C 3.5
(-1.3)
A 		6.8
(2.1)
A 		2
(-2.9)
A 		1.9
(-3)
A 		7.7
(3)
A 		2.4
(-2.5)
A 		6
avr 4
(0.5) 		3.4
(-0.5) 		2
(-2.6) 		1.7
(-3) 		5.7
(3) 		3.3
(-0.6) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.4
(3)
A 		0.6
(-2.1)
A 		0.6
(-2.1)
A 		0.3
(-3)
A 		2
B 0.8
(3)
A 		0.6
(-1)
A 		0.5
(-3)
A 		0.6
(-1)
A 		0
C 1.1
(1.8)
A 		0.9
(-0.6)
A 		0.7
(-3)
A 		1.2
(3)
A 		1
avr 1.4
(3) 		0.7
(-2.3) 		0.6
(-3) 		0.7
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.3
(0.2)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		2.1
(3)
A 		0.9
(-1.2)
A 		2
B 0.6
(-1.8)
A 		0.5
(-2.4)
A 		0.5
(-2.4)
A 		0.4
(-3)
A 		1
(0.6)
A 		1.4
(3)
A 		1
C 1.3
(-0.4)
A 		2.1
(1.9)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		2.5
(3)
A 		0.8
(-1.9)
A 		2
avr 1.1
(-0.2) 		1.1
(-0.2) 		0.5
(-2.6) 		0.4
(-3) 		1.9
(3) 		1
(-0.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.711
Sequence Type Exemplar sequence
Representative Public ID C54C8.6 NCBI
Target Description C54C8.6 /REP_DB=WormBase Gene ID /WP=CE08969 /TR=O02233 /GB=CAB05468.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060760 NCBI Caenorhabditis elegans LYSozyme family member (lys-9) (lys-9) mRNA, complete cds. 11/11 None
GENEFINDER00000034220 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12462974:12463947:-1 9/11 None
C54C8.6 ENSEMBL cdna:known chromosome:CEL140:I:12462974:12463850:-1 gene:C54C8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034210 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12462904-12463781(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lys-9
Ensembl C54C8.6
Entrez Gene 183772 Entrez gene
SwissProt O02233 EMBL-EBI
WormBase CE08969 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05468 Hypothetical protein C54C8.6 [Caenorhabditis elegans] ref|NP_493161.1| LYSozyme family member (lys-9) [Caenorhabditis elegans] 1.0E-94
blast CAB05468 Hypothetical protein C54C8.6 [Caenorhabditis elegans] ref|NP_493161.1| LYSozyme family member (lys-9) [Caenorhabditis elegans] 8.0E-65
Sequence
Target Sequence 
>C. ELEGANS:179057_AT
tgagggccactgtctctggaaagacaacaacgatattacctttattaagtaagttaatag
ttattgtaatcaaatcgacaagtattcactgcagtaccctaacatcgtccggactattcg
acagcactgctccaagggtgttcaaaaaccttgtcaactacggaggcgatatgtggttct
acatgaagccgtatccatcaaatgggaaatccggatctcagcaaatggaaaatgtgtatc
agggattgaaaagtgctcagattaagttttcacacatcacacaacacggaatctctgttc
aattcttcacttctcaatccaactggcactcgatcaccaacaacaaccgtagcttctcga
gctataaactctggtgggcacataccaatggagcaggaaatggtggagccacttcaccaa
acttcgaaggctttgtttcattcggcggatggacatcaagcagtctcgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGGCCACTGTCTCTGGAAAGAC 60 569 14 Antisense
AGTATTCACTGCAGTACCCTAACAT 258 63 94 Antisense
ATCGTCCGGACTATTCGACAGCACT 332 31 117 Antisense
ACAGCACTGCTCCAAGGGTGTTCAA 30 109 134 Antisense
GGTTCTACATGAAGCCGTATCCATC 82 507 188 Antisense
ACACATCACACAACACGGAATCTCT 72 111 285 Antisense
GAATCTCTGTTCAATTCTTCACTTC 363 329 302 Antisense
TCAATCCAACTGGCACTCGATCACC 471 633 327 Antisense
CAACAACAACCGTAGCTTCTCGAGC 629 189 351 Antisense
GAGCCACTTCACCAAACTTCGAAGG 620 383 419 Antisense
GATGGACATCAAGCAGTCTCGTTGG 515 407 461 Antisense
Sequence Source Affymetrix Proprietary Database