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[179056_s_at]

Description F52A8.3 /REP_DB=WormBase Gene ID /WP=CE05910 /TR=Q20635 /GB=CAA95821.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 90      6grp_total > 01      4grp_total > 49      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 112.7
(-3)
P 		286.5
(3)
P 		261.5
(2.1)
P 		178.6
(-0.7)
P 		174
B 132
(-3)
P 		289
(3)
P 		279.1
(2.6)
P 		151.7
(-2.2)
P 		157
C 127.4
(-3)
P 		265.1
(3)
P 		258.9
(2.7)
P 		147.1
(-2.1)
P 		138
avr 124
(-3) 		280.2
(3) 		266.5
(2.5) 		159.1
(-1.7) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 205.4
(2.7)
P 		208.6
(3)
P 		147.1
(-2.6)
P 		146.5
(-2.7)
P 		191.9
(1.5)
P 		142.9
(-3)
P 		66
B 220.3
(0.7)
P 		271.6
(3)
P 		141.3
(-2.8)
P 		136
(-3)
P 		232.8
(1.3)
P 		201.8
(-0.1)
P 		136
C 192
(0.1)
P 		246.2
(3)
P 		137.9
(-2.8)
P 		155.1
(-1.8)
P 		133.2
(-3)
P 		183.9
(-0.3)
P 		113
avr 205.9
(0.8) 		242.1
(3) 		142.1
(-3) 		145.9
(-2.8) 		186
(-0.4) 		176.2
(-1) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 41
(-0.9)
P 		62.2
(2.1)
P 		68.4
(3)
P 		26.1
(-3)
P 		42
B 42.1
(-1.5)
P 		71.4
(3)
P 		64.7
(2)
P 		32.3
(-3)
P 		39
C 42.2
(-1.4)
P 		76.2
(1.7)
P 		90.2
(3)
P 		24.8
(-3)
P 		65
avr 41.8
(-1.2) 		69.9
(2.4) 		74.4
(3) 		27.7
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 37.9
(-2.2)
P 		74.2
(3)
P 		32
(-3)
P 		37.1
(-2.3)
P 		57.9
(0.7)
P 		34.8
(-2.6)
P 		42
B 76.6
(1.2)
P 		90.4
(2.6)
P 		34.3
(-3)
P 		36
(-2.8)
P 		94.6
(3)
P 		75.2
(1.1)
P 		60
C 71.2
(2.5)
P 		75.1
(3)
P 		35.1
(-2.5)
P 		31.2
(-3)
P 		43.1
(-1.4)
P 		61.6
(1.2)
P 		44
avr 61.9
(0.7) 		79.9
(3) 		33.8
(-3) 		34.8
(-2.9) 		65.2
(1.1) 		57.2
(0) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179056_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.678
Sequence Type Exemplar sequence
Representative Public ID F52A8.3 NCBI
Target Description F52A8.3 /REP_DB=WormBase Gene ID /WP=CE05910 /TR=Q20635 /GB=CAA95821.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026304(11), NM_001026305(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026304 NCBI Caenorhabditis elegans F52A8.3a (F52A8.3) mRNA, complete cds. 11/11 None
NM_001026305 NCBI Caenorhabditis elegans F52A8.3b (F52A8.3) mRNA, complete cds. 10/11 None
SNAP00000013991 ENSEMBL cdna:SNAP chromosome:CEL140:I:7330460:7330967:-1 10/11 None
GENEFINDER00000013997 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7330460:7331720:-1 11/11 None
F52A8.3b ENSEMBL cdna:known chromosome:CEL140:I:7330460:7330997:-1 gene:F52A8.3 10/11 None
F52A8.3a ENSEMBL cdna:known chromosome:CEL140:I:7330460:7331720:-1 gene:F52A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7330390-7331651(-) 100.0 100.0
Public Domain and Genome References
Ensembl F52A8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95821 Hypothetical protein F52A8.3a [Caenorhabditis elegans] ref|NP_001021475.1| F52A8.3a [Caenorhabditis elegans] 3.0E-70
blast CAH10797 Hypothetical protein F52A8.3b [Caenorhabditis elegans] ref|NP_001021476.1| F52A8.3b [Caenorhabditis elegans] 3.0E-69
blast CAH10797 Hypothetical protein F52A8.3b [Caenorhabditis elegans] ref|NP_001021476.1| F52A8.3b [Caenorhabditis elegans] 5.0E-64
blast CAA95821 Hypothetical protein F52A8.3a [Caenorhabditis elegans] ref|NP_001021475.1| F52A8.3a [Caenorhabditis elegans] 6.0E-46
blast CAH10797 Hypothetical protein F52A8.3b [Caenorhabditis elegans] ref|NP_001021476.1| F52A8.3b [Caenorhabditis elegans] 8.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021476.1 1 5-24
F52A8.3b 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:179056_S_AT
gtatggtttagtctcatctcctatcattgcccaatctgctcctgttccaattcctgtcaa
ttatgataatattcctggtaatgctaattatattcaacacactcgtcaagctccacgtca
aatccacgtggactcatcaccaagagattctgaaatatctcgtgtcatggttcctggtga
tcaggtcatgttctctgctgaagatcgttattatacctcgtcgacggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGGTTTAGTCTCATCTCCTATC 609 455 150 Antisense
GATAATATTCCTGGTAATGCTAATT 20 423 214 Antisense
GCTAATTATATTCAACACACTCGTC 36 301 232 Antisense
TCAAGCTCCACGTCAAATCCACGTG 160 631 255 Antisense
ACGTGGACTCATCACCAAGAGATTC 619 95 275 Antisense
GACTCATCACCAAGAGATTCTGAAA 708 373 280 Antisense
CTGAAATATCTCGTGTCATGGTTCC 286 239 299 Antisense
GGTGATCAGGTCATGTTCTCTGCTG 24 501 325 Antisense
GGTCATGTTCTCTGCTGAAGATCGT 674 503 333 Antisense
TGAAGATCGTTATTATACCTCGTCG 302 573 348 Antisense
ATCGTTATTATACCTCGTCGACGGC 376 31 353 Antisense
Sequence Source Affymetrix Proprietary Database