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[179054_at]

Description C43F9.7 /REP_DB=WormBase Gene ID /WP=CE19735 /TR=Q9XUG8 /GB=CAB05150.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 74      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 700
1 2 3 4 range
A 110.2
(-2.7)
P 		84.3
(-2.9)
P 		78
(-3)
P 		772.6
(3)
P 		695
B 104.7
(-2.6)
P 		72.8
(-3)
P 		81.2
(-2.9)
P 		596.6
(3)
P 		524
C 99.8
(-2.8)
P 		83
(-3)
P 		80.1
(-3)
P 		679.6
(3)
P 		600
avr 104.9
(-2.8) 		80
(-3) 		79.8
(-3) 		682.9
(3) 		603

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 132
(-2.3)
P 		113.1
(-3)
P 		265.9
(2.6)
P 		276
(3)
P 		214.3
(0.7)
P 		177.5
(-0.6)
P 		163
B 119.3
(-3)
P 		143.4
(-2)
P 		215.2
(0.9)
P 		189.9
(-0.1)
P 		211
(0.8)
P 		265
(3)
P 		146
C 115.4
(-3)
P 		117.1
(-2.9)
P 		153.9
(-1.6)
P 		276.5
(2.7)
P 		204.1
(0.1)
P 		286
(3)
P 		171
avr 122.2
(-3) 		124.5
(-2.9) 		211.7
(1.3) 		247.5
(3) 		209.8
(1.2) 		242.8
(2.8) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 40.1
(-1.6)
P 		18.3
(-3)
P 		20.4
(-2.9)
P 		113.1
(3)
P 		95
B 33.4
(-2.2)
P 		18
(-3)
P 		18.8
(-3)
P 		127.1
(3)
P 		109
C 33
(-2.4)
P 		23.9
(-3)
P 		27.9
(-2.7)
P 		114.6
(3)
P 		91
avr 35.5
(-2.1) 		20.1
(-3) 		22.4
(-2.9) 		118.3
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 24.3
(-3)
P 		40.2
(-0.9)
P 		57.9
(1.4)
P 		70
(3)
P 		64.7
(2.3)
P 		43.2
(-0.5)
P 		46
B 41.5
(-3)
P 		47.7
(-2.4)
P 		52.2
(-1.9)
P 		50.3
(-2.1)
P 		85.7
(1.6)
P 		98.8
(3)
P 		57
C 42.8
(-2.3)
P 		35.7
(-3)
P 		39.2
(-2.7)
P 		55.6
(-1)
P 		66.1
(0)
P 		95.7
(3)
P 		60
avr 36.2
(-3) 		41.2
(-2.3) 		49.8
(-1.1) 		58.6
(0.1) 		72.2
(2) 		79.2
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10088
Sequence Type Exemplar sequence
Representative Public ID C43F9.7 NCBI
Target Description C43F9.7 /REP_DB=WormBase Gene ID /WP=CE19735 /TR=Q9XUG8 /GB=CAB05150.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069558 NCBI Caenorhabditis elegans C43F9.7 (C43F9.7) mRNA, complete cds. 11/11 None
GENEFINDER00000019780 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10593040:10593547:-1 11/11 None
C43F9.7 ENSEMBL cdna:known chromosome:CEL140:IV:10593040:10593547:-1 gene:C43F9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019774 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10593045-10593553(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43F9.7
Entrez Gene 183416 Entrez gene
SwissProt Q9XUG8 EMBL-EBI
WormBase CE19735 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05150 Hypothetical protein C43F9.7 [Caenorhabditis elegans] ref|NP_501959.1| C43F9.7 [Caenorhabditis elegans] 2.0E-23
blast CAE60753 Hypothetical protein CBG04439 [Caenorhabditis briggsae] 5.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501959.1 1 4-22
C43F9.7 1 4-22
GENEFINDER00000019780 1 4-22
Sequence
Target Sequence 
>C. ELEGANS:179054_AT
tattctcgttatgctcgtactgcttgtttgcgtctcagcatcctcatatgatccaatgga
caaacgagccgatgaagtagttccagaattccaaaacagccttatcaaacttctcgacag
acggccaccagttgtctacagccgtgcctcacgaatcgactgtatgctagcactccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTCGTTATGCTCGTACTGCTT 57 665 30 Antisense
GTCTCAGCATCCTCATATGATCCAA 97 469 61 Antisense
GCATCCTCATATGATCCAATGGACA 170 309 67 Antisense
GATCCAATGGACAAACGAGCCGATG 390 415 79 Antisense
ACGAGCCGATGAAGTAGTTCCAGAA 442 93 93 Antisense
TCCAGAATTCCAAAACAGCCTTATC 677 585 111 Antisense
AACAGCCTTATCAAACTTCTCGACA 356 137 124 Antisense
TATCAAACTTCTCGACAGACGGCCA 265 659 132 Antisense
ACGGCCACCAGTTGTCTACAGCCGT 198 95 150 Antisense
CGTGCCTCACGAATCGACTGTATGC 42 245 172 Antisense
AATCGACTGTATGCTAGCACTCCGA 597 167 183 Antisense
Sequence Source Affymetrix Proprietary Database