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[179052_s_at]

Description B0001.7 /REP_DB=WormBase Gene ID /WP=CE05145 /TR=Q17416 /GB=CAA93456.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_high_8_8 > 23      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 0      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 72.5
(-0.7)
P 		41.4
(-3)
P 		106.3
(1.9)
P 		120.9
(3)
M 		80
B 53.6
(-3)
P 		70.2
(-1.7)
P 		129.1
(3)
P 		96.6
(0.4)
P 		76
C 68.4
(-3)
P 		75.4
(-2.6)
P 		87.4
(-1.9)
P 		174.4
(3)
P 		106
avr 64.8
(-2.8) 		62.3
(-3) 		107.6
(1) 		130.6
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 103.3
(-2.6)
P 		74.5
(-3)
P 		81.4
(-2.9)
P 		150.8
(-1.9)
P 		306.5
(0.5)
P 		477.2
(3)
P 		403
B 64.8
(-3)
P 		88.7
(-2.7)
P 		89.1
(-2.7)
P 		122.7
(-2.2)
P 		315.6
(0.6)
P 		484.5
(3)
P 		420
C 53.4
(-3)
P 		94.8
(-2.5)
P 		90.1
(-2.5)
P 		116.4
(-2.2)
P 		273.7
(-0.3)
P 		534.7
(3)
P 		481
avr 73.8
(-3) 		86
(-2.8) 		86.9
(-2.8) 		130
(-2.2) 		298.6
(0.2) 		498.8
(3) 		425
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 26.4
(2.6)
P 		9
(-3)
P 		27.8
(3)
P 		17.7
(-0.2)
M 		19
B 17.1
(-3)
P 		17.3
(-2.9)
P 		29.9
(3)
P 		20.6
(-1.4)
P 		13
C 22.6
(-2.4)
P 		21.7
(-3)
P 		30.5
(3)
P 		29.4
(2.3)
P 		9
avr 22
(-0.3) 		16
(-3) 		29.4
(3) 		22.6
(-0) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 19
(-2.9)
P 		26.5
(-2.5)
P 		17.7
(-3)
P 		38.2
(-1.8)
P 		92.5
(1.6)
P 		116.2
(3)
P 		99
B 22.6
(-3)
P 		29.5
(-2.7)
P 		21.6
(-3)
P 		32.5
(-2.6)
P 		128.2
(1)
P 		180.7
(3)
P 		159
C 19.8
(-3)
P 		28.9
(-2.7)
P 		22.9
(-2.9)
P 		23.4
(-2.9)
P 		88.6
(-0.4)
P 		179
(3)
P 		159
avr 20.5
(-3) 		28.3
(-2.7) 		20.7
(-3) 		31.4
(-2.5) 		103.1
(0.6) 		158.6
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179052_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10335
Sequence Type Exemplar sequence
Representative Public ID B0001.7 NCBI
Target Description B0001.7 /REP_DB=WormBase Gene ID /WP=CE05145 /TR=Q17416 /GB=CAA93456.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069908 NCBI Caenorhabditis elegans B0001.7 (B0001.7) mRNA, complete cds. 11/11 None
SNAP00000035714 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12151345:12157085:-1 11/11 None
GENEFINDER00000035719 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12151345:12154213:-1 11/11 None
B0001.7 ENSEMBL cdna:known chromosome:CEL140:IV:12151225:12154213:-1 gene:B0001.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12151350-12154219(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0001.7
Entrez Gene 178165 Entrez gene
SwissProt Q17416 EMBL-EBI
WormBase CE05145 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93456 Hypothetical protein B0001.7 [Caenorhabditis elegans] ref|NP_502309.1| B0001.7 [Caenorhabditis elegans] 0.0
blast CAE62193 Hypothetical protein CBG06241 [Caenorhabditis briggsae] 0.0
blast CAE62193 Hypothetical protein CBG06241 [Caenorhabditis briggsae] 1.0E-161
Sequence
Target Sequence 
>C. ELEGANS:179052_S_AT
tccagtgttcacttcattttcgatgattttgagttgaatgttggtgactatgcgtatgtg
aagctgatccagaagaaagaggaaacggctcatctgcaatttcgatggaaatggatatct
ggaacaaagaaactttcaccattcaattgtcgcatcgatctgtttcagttgtttatagag
gaacaagtgtcttacaaatcaaaggacatgttaaacagaaacacatacacttccaaaaac
tttccgataattttcgatgctgatggaattatcaaaaatcccattccaggagccatatat
tgtgtggttattcttcgaaagaaaattcaagtgacgcaaacggaaagcccgactcacaaa
tatcaatggattattgattctgctcagagcaatccgtttattataacggaatactacaat
cctcacaatgctttcaacagatcgttcatagcctcaaagcaattttcgagttcagcagct
ttatcaactgactcgaaaaaaggatcctccggttctgaaaaatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGTGTTCACTTCATTTTCGATG 136 591 1636 Antisense
GGAAACGGCTCATCTGCAATTTCGA 378 527 1716 Antisense
ACTTTCACCATTCAATTGTCGCATC 428 101 1767 Antisense
TTGTCGCATCGATCTGTTTCAGTTG 331 707 1782 Antisense
GACGCAAACGGAAAGCCCGACTCAC 163 381 1968 Antisense
CTGCTCAGAGCAATCCGTTTATTAT 224 237 2015 Antisense
ACTACAATCCTCACAATGCTTTCAA 154 101 2048 Antisense
ACAGATCGTTCATAGCCTCAAAGCA 541 107 2072 Antisense
GCAATTTTCGAGTTCAGCAGCTTTA 331 323 2094 Antisense
AGCAGCTTTATCAACTGACTCGAAA 447 77 2109 Antisense
GGATCCTCCGGTTCTGAAAAATCAT 240 513 2137 Antisense
Sequence Source Affymetrix Proprietary Database