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[179051_s_at]

Description ZK228.3 /REP_DB=WormBase Gene ID /WP=CE24719 /TR=O46009 /GB=CAB04995.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 61      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 269.7
(3)
P 		212.8
(1.7)
P 		219.9
(1.9)
P 		6.8
(-3)
A 		263
B 185.9
(3)
P 		137.8
(1.4)
A 		146.6
(1.7)
P 		9.3
(-3)
A 		177
C 222.3
(3)
P 		164.1
(1.4)
P 		213.4
(2.8)
P 		6.5
(-3)
A 		216
avr 226
(3) 		171.6
(1.5) 		193.3
(2.1) 		7.5
(-3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 165.5
(3)
P 		87.8
(-1.1)
P 		134
(1.4)
P 		118.6
(0.6)
P 		70.6
(-1.9)
A 		50.4
(-3)
A 		115
B 194.2
(3)
P 		151.1
(1.1)
P 		145.7
(0.9)
P 		118.8
(-0.3)
M 		69.2
(-2.5)
M 		57.8
(-3)
P 		136
C 121.5
(1.5)
P 		151.2
(3)
P 		128.1
(1.8)
P 		118.5
(1.3)
P 		51.2
(-2.1)
A 		33.2
(-3)
A 		118
avr 160.4
(3) 		130
(1.4) 		135.9
(1.7) 		118.6
(0.8) 		63.7
(-2.1) 		47.1
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 98.2
(3)
P 		46.2
(-0.2)
P 		57.5
(0.5)
P 		1
(-3)
A 		97
B 59.3
(3)
P 		34
(0.4)
A 		34
(0.4)
P 		2
(-3)
A 		57
C 73.6
(2.9)
P 		47.2
(0.8)
P 		74.4
(3)
P 		1.1
(-3)
A 		73
avr 77
(3) 		42.5
(0.3) 		55.3
(1.3) 		1.4
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 30.5
(2.8)
P 		31.2
(3)
P 		29.2
(2.4)
P 		30.1
(2.7)
P 		21.3
(-0.1)
A 		12.3
(-3)
A 		19
B 67.6
(3)
P 		50.3
(0.7)
P 		35.4
(-1.2)
P 		31.5
(-1.7)
M 		28.1
(-2.2)
M 		21.6
(-3)
P 		46
C 45
(2.8)
P 		46.1
(3)
P 		32.6
(0.7)
P 		23.8
(-0.8)
P 		16.6
(-2.1)
A 		11.1
(-3)
A 		35
avr 47.7
(3) 		42.5
(2) 		32.4
(0.2) 		28.5
(-0.5) 		22
(-1.7) 		15
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179051_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13301
Sequence Type Exemplar sequence
Representative Public ID ZK228.3 NCBI
Target Description ZK228.3 /REP_DB=WormBase Gene ID /WP=CE24719 /TR=O46009 /GB=CAB04995.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075213 NCBI Caenorhabditis elegans ZK228.3 (ZK228.3) mRNA, complete cds. 11/11 None
SNAP00000029496 ENSEMBL cdna:SNAP chromosome:CEL140:V:18461458:18463805:-1 9/11 None
GENEFINDER00000029507 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18460615:18463805:-1 11/11 None
ZK228.3 ENSEMBL cdna:known chromosome:CEL140:V:18460876:18463805:-1 gene:ZK228.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18460887-18463805(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK228.3
Entrez Gene 180200 Entrez gene
SwissProt O46009 EMBL-EBI
WormBase CE24719 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04995 Hypothetical protein ZK228.3 [Caenorhabditis elegans] ref|NP_507614.1| ZK228.3 [Caenorhabditis elegans] 0.0
blast CAB04995 Hypothetical protein ZK228.3 [Caenorhabditis elegans] ref|NP_507614.1| ZK228.3 [Caenorhabditis elegans] 1.0E-157
blast CAB04995 Hypothetical protein ZK228.3 [Caenorhabditis elegans] ref|NP_507614.1| ZK228.3 [Caenorhabditis elegans] 1.0E-145
blast CAB04163 Hypothetical protein F21D9.4 [Caenorhabditis elegans] ref|NP_507745.1| F21D9.4 [Caenorhabditis elegans] 1.0E-133
blast CAE56201 Hypothetical protein CBG23825 [Caenorhabditis briggsae] 1.0E-129
blast CAB04163 Hypothetical protein F21D9.4 [Caenorhabditis elegans] ref|NP_507745.1| F21D9.4 [Caenorhabditis elegans] 1.0E-115
blast CAE56201 Hypothetical protein CBG23825 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029507 2 261-280,389-411
Sequence
Target Sequence 
>C. ELEGANS:179051_S_AT
aattgcgttctgacagctgcagtggacatgtctgaaaagtacgccaccacttttggattc
aaggaaatgctcccgttttggcatatggaagcagaaattgagccgggaaaaatgagaatt
tcagcggatttgacggagaaatatgttacaaaggactggaaagaggtgggtgaagctcag
ctagaagcctatgacctaacaatttgcacccgaaatcgcaagaaactcatgagaaactgg
tttcaacaggatcaggtttatactagaatcgcatttgacagcaaccagaaaattgtgggt
tactgtactatccgagtggtcaacctaaaccggctttgcgctgcaccgttttatgctgaa
aatgtggaagttgcggaggttttaatggcggatatgatgaaaagtattccggattttgca
agttttgagaagttgattttctggtacccggatgttaataaagatgtggagagattgctc
caaaagttgctcccaagtgatggatatcatataaaaaaagatttccgtacccaatttacg
aaaaatgtgatcaaagcccgagatggggtggtgtactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCGTTCTGACAGCTGCAGTGG 26 179 334 Antisense
GGACATGTCTGAAAAGTACGCCACC 609 523 357 Antisense
GTACGCCACCACTTTTGGATTCAAG 503 457 372 Antisense
GGAAATGCTCCCGTTTTGGCATATG 465 527 396 Antisense
GCCTATGACCTAACAATTTGCACCC 662 279 520 Antisense
GGGTTACTGTACTATCCGAGTGGTC 201 497 630 Antisense
TCCGAGTGGTCAACCTAAACCGGCT 188 375 644 Antisense
TTGCGCTGCACCGTTTTATGCTGAA 217 701 669 Antisense
GTTGATTTTCTGGTACCCGGATGTT 69 439 765 Antisense
CTCCAAAAGTTGCTCCCAAGTGATG 34 233 811 Antisense
AGCCCGAGATGGGGTGGTGTACTCC 207 83 888 Antisense
Sequence Source Affymetrix Proprietary Database