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[179050_at]

Description K04C1.6 /REP_DB=WormBase Gene ID /WP=CE18849 /TR=Q9XTH3 /GB=CAB04583.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 20      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5.9
(-0.4)
A 		5.2
(-1)
A 		10
(3)
A 		2.8
(-3)
A 		7
B 7.1
(-0.5)
A 		13.5
(3)
A 		2.6
(-3)
A 		2.8
(-2.9)
A 		11
C 8.8
(-1.4)
A 		3
(-2.8)
A 		2.4
(-3)
A 		26.2
(3)
A 		24
avr 7.3
(-0.5) 		7.2
(-0.6) 		5
(-3) 		10.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.1
(-1.9)
A 		6.6
(-1.8)
A 		2.4
(-3)
A 		2.9
(-2.9)
A 		4.9
(-2.3)
A 		23.1
(3)
A 		21
B 3.5
(-1.4)
A 		5.5
(0.8)
A 		7.5
(3)
A 		3.6
(-1.3)
A 		3
(-1.9)
A 		2
(-3)
A 		6
C 13.1
(0.8)
A 		7.6
(-1.1)
A 		19.3
(3)
A 		4.4
(-2.3)
A 		13.8
(1.1)
A 		2.3
(-3)
A 		17
avr 7.6
(0.9) 		6.6
(-0) 		9.7
(3) 		3.6
(-3) 		7.2
(0.5) 		9.1
(2.4) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.1
(1.6)
A 		1.1
(-1.1)
A 		2.6
(3)
A 		0.4
(-3)
A 		2
B 2.3
(0.8)
A 		3.3
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		3
C 2.9
(0.4)
A 		0.9
(-3)
A 		0.9
(-3)
A 		4.4
(3)
A 		4
avr 2.4
(3) 		1.8
(-0.6) 		1.4
(-3) 		1.8
(-0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.1
(-2.3)
A 		2.3
(-0.9)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		1.5
(-1.8)
A 		5.6
(3)
A 		5
B 1.2
(-0.6)
A 		1.8
(3)
A 		1.8
(3)
A 		0.9
(-2.4)
A 		1.2
(-0.6)
A 		0.8
(-3)
A 		1
C 4.9
(3)
A 		2.3
(-0.8)
A 		4.9
(3)
A 		0.9
(-2.9)
A 		4.5
(2.4)
A 		0.8
(-3)
A 		4
avr 2.4
(3) 		2.1
(1.9) 		2.4
(3) 		0.8
(-3) 		2.4
(3) 		2.4
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17442
Sequence Type Exemplar sequence
Representative Public ID K04C1.6 NCBI
Target Description K04C1.6 /REP_DB=WormBase Gene ID /WP=CE18849 /TR=Q9XTH3 /GB=CAB04583.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077969 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-36) (srg-36) mRNA, complete cds. 11/11 None
K04C1.6 ENSEMBL cdna:known chromosome:CEL140:X:14229588:14230796:-1 gene:K04C1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041357 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14229587-14230796(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srg-36
Ensembl K04C1.6
Entrez Gene 186981 Entrez gene
SwissProt Q9XTH3 EMBL-EBI
WormBase CE18849 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94216 Hypothetical protein K04C1.6 [Caenorhabditis elegans] emb|CAB04583.1| Hypothetical protein K04C1.6 [Caenorhabditis elegans] ref|NP_510370.1| Serpentine Receptor, class G (gamma) family member (srg-36) [Caenorhabditis elegans] 1.0E-160
blast CAA94211 Hypothetical protein K04C1.1 [Caenorhabditis elegans] ref|NP_510371.1| Serpentine Receptor, class G (gamma) family member (srg-37) [Caenorhabditis elegans] 4.0E-55
blast CAE67415 Hypothetical protein CBG12903 [Caenorhabditis briggsae] 6.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510370.1 7 10-32,44-66,98-120,140-162,182-204,230-252,267-289
K04C1.6 7 10-32,44-66,98-120,140-162,182-204,230-252,267-289
Sequence
Target Sequence 
>C. ELEGANS:179050_AT
aattccatgggcttttgctgtaccaattttggtgggacggtcttactacgtgtatcattc
acatggtgactacttttttctagataccacaataaaacgctcgctgatctataccatttt
ggcaccaacgctgtccgtgataactgcaatgaatagctttttgaatttcatgtcagttcg
caaggttatcattttgaagctctccggaggaagagtcccggaaaaaaatctcttgcaaat
gtcctttgtgattttcttcattgatatttttctggttatactgactttgattaaagcaat
aataattgcatgtggtttatcgttcaaatcggaatcgacggacgagattcttagttggat
cgtcattctcattcctttcgccagcgacgcactcactctcacacaaccgttgctgctatt
gttcttcagcaaaactgtccgaagatgttgtatttggccattcccgtgtttgaaatcact
ccgctctcaccgattgattgccagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCATGGGCTTTTGCTGTACCA 635 175 456 Antisense
GTGGGACGGTCTTACTACGTGTATC 648 487 487 Antisense
GATACCACAATAAAACGCTCGCTGA 497 423 538 Antisense
GCTCGCTGATCTATACCATTTTGGC 419 299 554 Antisense
AACGCTGTCCGTGATAACTGCAATG 527 145 582 Antisense
TATCATTTTGAAGCTCTCCGGAGGA 2 653 642 Antisense
AGTTGGATCGTCATTCTCATTCCTT 544 65 808 Antisense
ACTCTCACACAACCGTTGCTGCTAT 130 101 850 Antisense
AGATGTTGTATTTGGCCATTCCCGT 607 67 898 Antisense
TCCCGTGTTTGAAATCACTCCGCTC 46 597 917 Antisense
GCTCTCACCGATTGATTGCCAGAAA 19 301 938 Antisense
Sequence Source Affymetrix Proprietary Database