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[179049_at]

Description C16D2.1 /REP_DB=WormBase Gene ID /WP=CE15622 /TR=O62061 /GB=CAA19421.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 53.7
(3)
A 		49.8
(2.4)
A 		46.2
(1.8)
A 		16.5
(-3)
A 		37
B 25.2
(3)
A 		20.9
(-1.4)
A 		19.3
(-3)
A 		25.2
(3)
A 		6
C 51.7
(-1.4)
A 		20.5
(-3)
A 		48.1
(-1.6)
A 		137.5
(3)
A 		117
avr 43.5
(-0.3) 		30.4
(-3) 		37.9
(-1.5) 		59.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 21.6
(-2.2)
A 		28
(-1.9)
A 		14.2
(-2.7)
A 		7.8
(-3)
A 		27.1
(-1.9)
A 		117.8
(3)
A 		110
B 51.7
(-0.3)
A 		78.8
(1.5)
A 		60.3
(0.3)
A 		12.3
(-3)
A 		27.5
(-2)
A 		100.2
(3)
A 		88
C 4.4
(-3)
A 		19.7
(-1.8)
A 		12.3
(-2.4)
A 		19.2
(-1.9)
A 		76.2
(2.5)
A 		82.2
(3)
A 		78
avr 25.9
(-2.1) 		42.2
(-1) 		28.9
(-1.9) 		13.1
(-3) 		43.6
(-0.9) 		100.1
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 19.5
(3)
A 		10.8
(-0.1)
A 		12.1
(0.4)
A 		2.4
(-3)
A 		17
B 8
(3)
A 		5.2
(-1.8)
A 		4.5
(-3)
A 		5.4
(-1.5)
A 		4
C 17.1
(0.9)
A 		5.9
(-3)
A 		16.7
(0.7)
A 		23.2
(3)
A 		17
avr 14.9
(3) 		7.3
(-3) 		11.1
(-0) 		10.3
(-0.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 4
(-2.6)
A 		10
(-1.2)
A 		3.1
(-2.8)
A 		2
(-3)
A 		8.2
(-1.6)
A 		28.7
(3)
A 		27
B 18
(-0.4)
A 		26.2
(1)
A 		14.7
(-1)
A 		3.3
(-3)
A 		11.2
(-1.6)
A 		37.4
(3)
A 		34
C 1.6
(-3)
A 		6
(-2)
A 		3.1
(-2.7)
A 		3.9
(-2.5)
A 		24.7
(2.4)
A 		27.5
(3)
A 		26
avr 7.9
(-2) 		14.1
(-0.7) 		7
(-2.2) 		3.1
(-3) 		14.7
(-0.5) 		31.2
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2913
Sequence Type Exemplar sequence
Representative Public ID C16D2.1 NCBI
Target Description C16D2.1 /REP_DB=WormBase Gene ID /WP=CE15622 /TR=O62061 /GB=CAA19421.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063547 NCBI Caenorhabditis elegans C16D2.1 (C16D2.1) mRNA, complete cds. 11/11 None
SNAP00000041307 ENSEMBL cdna:SNAP chromosome:CEL140:II:9132871:9134415:1 11/11 None
GENEFINDER00000041309 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9133440:9134415:1 10/11 None
C16D2.1 ENSEMBL cdna:known chromosome:CEL140:II:9132124:9134415:1 gene:C16D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9132120-9134412(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D2.1
Entrez Gene 174453 Entrez gene
SwissProt O62061 EMBL-EBI
WormBase CE15622 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19421 Hypothetical protein C16D2.1 [Caenorhabditis elegans] ref|NP_495948.1| C16D2.1 [Caenorhabditis elegans] 1.0E-105
blast CAA19421 Hypothetical protein C16D2.1 [Caenorhabditis elegans] ref|NP_495948.1| C16D2.1 [Caenorhabditis elegans] 1.0E-104
blast CAA19421 Hypothetical protein C16D2.1 [Caenorhabditis elegans] ref|NP_495948.1| C16D2.1 [Caenorhabditis elegans] 7.0E-95
blast CAE59808 Hypothetical protein CBG03271 [Caenorhabditis briggsae] 5.0E-63
blast CAE59808 Hypothetical protein CBG03271 [Caenorhabditis briggsae] 3.0E-62
blast CAE59808 Hypothetical protein CBG03271 [Caenorhabditis briggsae] 5.0E-59
Sequence
Target Sequence 
>C. ELEGANS:179049_AT
tgagctgggtgacgtggcaactccagctgttccaagcccaatcgaagcgacaaccgccgt
ctgtgctacaccaaatcaagccagacgcgttatcaaaactattgatggccagcaattggt
gctctgtgccaacgatgtcaaatatctttctgtggtcgaaaatatgtttgccaacttgaa
taatctgagtagtgatgcgtctgatgagcaattcattgtcatcccaatttcgatcgagtc
aaagactatgcaaaaaattattgattggagtcgcgctgccaagaagattgatgagaaaac
ccttgatttttgtcaatttttcccgaatcttacgttgaaagaatgcattcaaattttgga
agcaagccttttcctggagacatcctaccttggaaaatgtgcagccaaatgggtggcctc
caaacttgagggaaagagcacaggtgaaatggcacaaattctcgaagttgctcatgtcgg
attggacccaacatccgaacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCTGGGTGACGTGGCAACTCCA 177 569 63 Antisense
TGTTCCAAGCCCAATCGAAGCGACA 246 563 90 Antisense
GCCGTCTGTGCTACACCAAATCAAG 48 283 118 Antisense
GATGGCCAGCAATTGGTGCTCTGTG 154 407 166 Antisense
GTGCTCTGTGCCAACGATGTCAAAT 189 479 181 Antisense
TTGTCATCCCAATTTCGATCGAGTC 569 707 278 Antisense
GGAGTCGCGCTGCCAAGAAGATTGA 89 517 329 Antisense
TGTCAATTTTTCCCGAATCTTACGT 299 559 373 Antisense
AGCAAGCCTTTTCCTGGAGACATCC 169 77 423 Antisense
GTGCAGCCAAATGGGTGGCCTCCAA 418 481 461 Antisense
GGATTGGACCCAACATCCGAACAGC 458 507 541 Antisense
Sequence Source Affymetrix Proprietary Database