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[179047_at]

Description F32B4.1 /REP_DB=WormBase Gene ID /WP=CE19830 /TR=Q9XV45 /GB=CAB04238.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 115.8
(2.1)
A 		23.2
(-3)
A 		132.1
(3)
A 		81.1
(0.2)
A 		109
B 55.8
(-3)
A 		84.3
(0.1)
A 		110.6
(3)
A 		73.4
(-1.1)
A 		55
C 99.6
(1.1)
A 		106.8
(3)
A 		83.6
(-3)
A 		100.5
(1.4)
A 		23
avr 90.4
(0) 		71.4
(-3) 		108.8
(3) 		85
(-0.8) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 33.7
(0.2)
A 		48.7
(2.4)
A 		12.2
(-3)
A 		52.8
(3)
A 		21.4
(-1.6)
A 		25
(-1.1)
A 		41
B 44.4
(1.5)
A 		53.7
(3)
A 		26.4
(-1.3)
A 		15.5
(-3)
A 		41.3
(1.1)
A 		31.9
(-0.4)
A 		38
C 48.4
(2.4)
A 		26.1
(-0.3)
A 		53.2
(3)
A 		4.3
(-3)
A 		7.8
(-2.6)
A 		16.5
(-1.5)
A 		49
avr 42.2
(2.8) 		42.8
(3) 		30.6
(-0.8) 		24.2
(-2.8) 		23.5
(-3) 		24.5
(-2.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 42.2
(3)
A 		5
(-3)
A 		34.5
(1.8)
A 		11.9
(-1.9)
A 		37
B 17.8
(-1.7)
A 		20.8
(0.1)
A 		25.6
(3)
A 		15.6
(-3)
A 		10
C 33
(3)
A 		30.7
(2.1)
A 		29.1
(1.5)
A 		17
(-3)
A 		16
avr 31
(3) 		18.8
(-1.5) 		29.7
(2.5) 		14.8
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.2
(-1.5)
A 		17.3
(3)
A 		2.6
(-3)
A 		13.4
(1.4)
A 		6.5
(-1.4)
A 		6.1
(-1.6)
A 		15
B 15.4
(1.9)
A 		17.9
(3)
A 		6.4
(-2)
A 		4.1
(-3)
A 		16.8
(2.5)
A 		11.9
(0.4)
A 		14
C 17.9
(3)
A 		8
(-0.5)
A 		13.5
(1.4)
A 		0.9
(-3)
A 		2.5
(-2.4)
A 		5.5
(-1.4)
A 		17
avr 13.2
(2.1) 		14.4
(3) 		7.5
(-2) 		6.1
(-3) 		8.6
(-1.2) 		7.8
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1606
Sequence Type Exemplar sequence
Representative Public ID F32B4.1 NCBI
Target Description F32B4.1 /REP_DB=WormBase Gene ID /WP=CE19830 /TR=Q9XV45 /GB=CAB04238.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060539 NCBI Caenorhabditis elegans F32B4.1 (F32B4.1) mRNA, complete cds. 11/11 None
SNAP00000030032 ENSEMBL cdna:SNAP chromosome:CEL140:I:11518189:11525231:1 10/11 None
GENEFINDER00000030039 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11518189:11520892:1 11/11 None
F32B4.1 ENSEMBL cdna:known chromosome:CEL140:I:11518189:11520892:1 gene:F32B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11518119-11520823(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32B4.1
Entrez Gene 185190 Entrez gene
SwissProt Q9XV45 EMBL-EBI
WormBase CE19830 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6260 DNA replication inferred from electronic annotation QuickGO AmiGO
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3910 DNA ligase (ATP) activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04238 Hypothetical protein F32B4.1 [Caenorhabditis elegans] ref|NP_492940.1| F32B4.1 [Caenorhabditis elegans] 0.0
blast CAB04232 Hypothetical protein F32B4.6 [Caenorhabditis elegans] ref|NP_492942.1| F32B4.6 [Caenorhabditis elegans] 1.0E-172
blast CAE69315 Hypothetical protein CBG15380 [Caenorhabditis briggsae] 1.0E-147
blast CAE60710 Hypothetical protein CBG04378 [Caenorhabditis briggsae] 2.0E-56
blast NP_494329 F22E5.1 [Caenorhabditis elegans] gb|AAB66167.1| Hypothetical protein F22E5.1 [Caenorhabditis elegans] 2.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492940.1 1 7-26
F32B4.1 1 7-26
SNAP00000030032 1 7-26
GENEFINDER00000030039 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:179047_AT
ggacaagagctccactactatcgagctctgcacgggatctgcgagaatctcgagaacctc
atgagagtggatggaatctggatgtgtggaagagaaacttgaatgagtgtcggaagggac
agtatctgctgcatgggtatagtgggcatgggatcctgtccgccacaaatccagccgtct
acaaatacttcccgacaaacccggcggaactcaaaaagcccaaagcaaaaatgtacgatg
cgggatttgtgtacgcggtggccacccgacagaccatgttggatatcgtgaaatggtact
tcttatgtgctcttcaggaagattgcatggctccgaaggatgccgtcctgcgatgtacat
tcgagaatggagaccggttttcaagttatgccgggtgtcatagatacgaccaatcaataa
tcaatctggtgcttgccaaccaattctggtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAAGAGCTCCACTACTATCGAG 251 527 713 Antisense
AGCTCTGCACGGGATCTGCGAGAAT 215 81 736 Antisense
GGGACAGTATCTGCTGCATGGGTAT 111 495 828 Antisense
TATAGTGGGCATGGGATCCTGTCCG 700 659 850 Antisense
AATCCAGCCGTCTACAAATACTTCC 651 167 880 Antisense
GCCACCCGACAGACCATGTTGGATA 445 279 973 Antisense
ATGGTACTTCTTATGTGCTCTTCAG 342 51 1005 Antisense
TTGCATGGCTCCGAAGGATGCCGTC 526 703 1035 Antisense
GCCGTCCTGCGATGTACATTCGAGA 124 283 1054 Antisense
GGTTTTCAAGTTATGCCGGGTGTCA 114 505 1088 Antisense
GGTGCTTGCCAACCAATTCTGGTAC 464 501 1140 Antisense
Sequence Source Affymetrix Proprietary Database