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[179046_at]

Description F46A9.1 /REP_DB=WormBase Gene ID /WP=CE10572 /TR=Q93729 /GB=CAB03106.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12.5
(0.5)
A 		4.3
(-3)
A 		4.7
(-2.8)
A 		18.5
(3)
A 		14
B 14.1
(-0.2)
A 		4.8
(-3)
A 		24.5
(3)
A 		16.4
(0.5)
A 		20
C 1.1
(-3)
A 		12.1
(0.2)
A 		3.4
(-2.3)
A 		22
(3)
A 		21
avr 9.2
(-1.9) 		7.1
(-3) 		10.9
(-1.1) 		19
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 10.3
(-3)
A 		17.8
(-2.8)
A 		8.5
(-3)
A 		99.8
(-1)
P 		218.2
(1.7)
P 		278.9
(3)
P 		270
B 1.6
(-3)
A 		9.5
(-2.8)
A 		20.6
(-2.6)
A 		72.4
(-1.3)
A 		236.4
(2.6)
P 		255.2
(3)
P 		254
C 13
(-2.9)
A 		24.3
(-2.7)
A 		9.2
(-3)
A 		72.1
(-1.9)
P 		186.7
(0.1)
P 		351.3
(3)
P 		342
avr 8.3
(-3) 		17.2
(-2.8) 		12.8
(-2.9) 		81.4
(-1.5) 		213.8
(1.3) 		295.1
(3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.6
(3)
A 		0.9
(-3)
A 		1.2
(-2.5)
A 		2.7
(-0.1)
A 		4
B 4.5
(1.4)
A 		1.2
(-3)
A 		5.7
(3)
A 		3.5
(0.1)
A 		5
C 0.4
(-3)
A 		3.5
(2.6)
A 		1.2
(-1.5)
A 		3.7
(3)
A 		3
avr 3.2
(2.6) 		1.9
(-3) 		2.7
(0.4) 		3.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 1.9
(-3)
A 		6.3
(-2.6)
A 		1.9
(-3)
A 		25.3
(-0.9)
P 		65.8
(2.8)
P 		67.9
(3)
P 		66
B 0.6
(-3)
A 		3.2
(-2.8)
A 		5
(-2.7)
A 		19.2
(-1.8)
A 		96
(3)
P 		95.2
(2.9)
P 		95
C 4.8
(-2.9)
A 		7.4
(-2.7)
A 		2.3
(-3)
A 		14.5
(-2.4)
P 		60.4
(0)
P 		117.6
(3)
P 		115
avr 2.4
(-3) 		5.6
(-2.8) 		3.1
(-3) 		19.7
(-1.9) 		74.1
(1.7) 		93.6
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.558
Sequence Type Exemplar sequence
Representative Public ID F46A9.1 NCBI
Target Description F46A9.1 /REP_DB=WormBase Gene ID /WP=CE10572 /TR=Q93729 /GB=CAB03106.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060108 NCBI Caenorhabditis elegans F46A9.1 (F46A9.1) mRNA, complete cds. 11/11 None
SNAP00000008775 ENSEMBL cdna:SNAP chromosome:CEL140:I:9466021:9466929:1 11/11 None
GENEFINDER00000008784 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9466021:9466929:1 11/11 None
F46A9.1 ENSEMBL cdna:known chromosome:CEL140:I:9466021:9466956:1 gene:F46A9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9465951-9466860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46A9.1
Entrez Gene 172772 Entrez gene
SwissProt Q93729 EMBL-EBI
WormBase CE10572 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03106 Hypothetical protein F46A9.1 [Caenorhabditis elegans] ref|NP_492509.1| F46A9.1 [Caenorhabditis elegans] 1.0E-130
blast CAB03107 Hypothetical protein F46A9.2 [Caenorhabditis elegans] ref|NP_492510.1| F46A9.2 [Caenorhabditis elegans] 2.0E-45
blast CAA22331 Hypothetical protein Y18D10A.21 [Caenorhabditis elegans] ref|NP_493259.2| Y18D10A.21 [Caenorhabditis elegans] 9.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179046_AT
tttcaaattcccaacgacaagccattgaagtacactttgaaatgcactgctgatgagaaa
caggatgttatcattcaagttcattcggttttcttcgaaattgttggtgcaagacgcaag
catggagtcacttctcaagagtttcatgttcttggaaaaaacgaagaaatgacttttgag
attggtctgaaggatttgaccaatgtttcgtacgataatttcgagcatgcgcaacttgcg
tctgccgctggttttatcacgttcacacactacaagtcttctagagatgatgattccgat
gcttcatggggtcccaacaagaacttgctcatcgtcatcactgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAAATTCCCAACGACAAGCCAT 486 671 100 Antisense
GTACACTTTGAAATGCACTGCTGAT 205 461 129 Antisense
TATCATTCAAGTTCATTCGGTTTTC 400 657 168 Antisense
AGACGCAAGCATGGAGTCACTTCTC 301 71 211 Antisense
GTCACTTCTCAAGAGTTTCATGTTC 558 465 226 Antisense
GGATTTGACCAATGTTTCGTACGAT 423 507 291 Antisense
CGAGCATGCGCAACTTGCGTCTGCC 556 249 321 Antisense
GGTTTTATCACGTTCACACACTACA 155 507 349 Antisense
ATGATTCCGATGCTTCATGGGGTCC 251 47 389 Antisense
ATGGGGTCCCAACAAGAACTTGCTC 154 11 405 Antisense
AACTTGCTCATCGTCATCACTGACG 645 137 421 Antisense
Sequence Source Affymetrix Proprietary Database