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[179045_at]

Description T10C6.8 /REP_DB=WormBase Gene ID /WP=CE16383 /TR=O45770 /GB=CAB07664.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 25.7
(-3)
A 		35.9
(-2.1)
A 		59.1
(0)
A 		91.6
(3)
A 		66
B 27.5
(-1.8)
A 		59.3
(3)
A 		32.7
(-1)
A 		19.2
(-3)
A 		40
C 50.6
(-2.4)
A 		52.2
(-2.2)
A 		46.5
(-3)
A 		89.5
(3)
A 		43
avr 34.6
(-3) 		49.1
(-0.3) 		46.1
(-0.9) 		66.8
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 76
(-1.5)
A 		67.5
(-1.7)
A 		46.9
(-2.3)
A 		18.9
(-3)
A 		129.5
(-0.1)
P 		246.9
(3)
P 		228
B 74.3
(-2.1)
A 		64.8
(-2.5)
A 		72.7
(-2.2)
A 		51.8
(-3)
A 		122.7
(-0.3)
M 		207.5
(3)
P 		156
C 26.8
(-3)
A 		64.4
(-2)
A 		66.8
(-1.9)
A 		60.2
(-2.1)
A 		129.6
(-0.2)
A 		249.4
(3)
P 		223
avr 59
(-2.5) 		65.6
(-2.3) 		62.1
(-2.4) 		43.6
(-3) 		127.3
(-0.4) 		234.6
(3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.3
(-1.8)
A 		7.8
(-3)
A 		15.5
(3)
A 		13.4
(1.4)
A 		8
B 8.8
(-0.3)
A 		14.6
(3)
A 		7.6
(-1)
A 		4.1
(-3)
A 		11
C 16.7
(3)
A 		15
(-3)
A 		16.2
(1.2)
A 		15.1
(-2.6)
A 		2
avr 11.6
(-1.1) 		12.5
(1.4) 		13.1
(3) 		10.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 14
(-2)
A 		24
(-0.9)
A 		10.2
(-2.4)
A 		4.8
(-3)
A 		39.1
(0.7)
P 		60.1
(3)
P 		55
B 25.9
(-1.9)
A 		21.6
(-2.3)
A 		17.7
(-2.6)
A 		13.7
(-3)
A 		49.9
(0.4)
M 		77.4
(3)
P 		64
C 9.9
(-3)
A 		19.6
(-2.2)
A 		17
(-2.4)
A 		12.1
(-2.8)
A 		41.9
(-0.4)
A 		83.5
(3)
P 		74
avr 16.6
(-2.4) 		21.7
(-1.9) 		15
(-2.5) 		10.2
(-3) 		43.6
(0.2) 		73.7
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12553
Sequence Type Exemplar sequence
Representative Public ID T10C6.8 NCBI
Target Description T10C6.8 /REP_DB=WormBase Gene ID /WP=CE16383 /TR=O45770 /GB=CAB07664.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027928 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16030084:16031660:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027906 7/11 Cross Hyb Matching Probes None
SNAP00000027907 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16030083-16031921(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T24798 hypothetical protein T10C6.8 - Caenorhabditis elegans 1.0E-145
blast AAB04872 Hypothetical protein F08F3.6 [Caenorhabditis elegans] ref|NP_504434.1| F08F3.6 [Caenorhabditis elegans] 2.0E-38
blast CAB07666 Hypothetical protein T10C6.10 [Caenorhabditis elegans] ref|NP_507030.1| T10C6.10 [Caenorhabditis elegans] 6.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027928 1 20-37
Sequence
Target Sequence 
>C. ELEGANS:179045_AT
tcatcattaatctccctatcgacacaactaagttcgatctgaatgagatgttcaccctcc
gcaacgtttgcctcatgaatgctaattggatgactcgtgcgttccttcagagcgtgaatt
tcactcgtctcacgcttacctacactaacctcaccgcgcttgatgtcaacgcgttcatcc
agcagtggacacttggaaaatgcagcaatctgaaaagactcgagattctaaacaatgttg
cattcaatgcggataatcttaaaatcaacctgaatcttcagccatgggatcggggaaaca
gaaatcaatattatatgtcagtttttagagattttttttatttacgccaaccgccgtgta
ctatttcccgaattgcttctagttttagaatggacaaccaattcaaaccatatctcctgg
atctggaaaacggcaaggacatagaaggtgacggaaaactcgccaccctgttccattcgg
gtaaaaaaattttgttcgttgtctggaaccggcggcattttgatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCATTAATCTCCCTATCGACAC 687 619 563 Antisense
TCTGAATGAGATGTTCACCCTCCGC 518 607 600 Antisense
CCGCAACGTTTGCCTCATGAATGCT 76 263 621 Antisense
AATTGGATGACTCGTGCGTTCCTTC 688 177 646 Antisense
CGTGAATTTCACTCGTCTCACGCTT 327 245 675 Antisense
CTCACCGCGCTTGATGTCAACGCGT 353 227 712 Antisense
TCAACGCGTTCATCCAGCAGTGGAC 551 631 728 Antisense
GAATCTTCAGCCATGGGATCGGGGA 103 329 834 Antisense
GTGTACTATTTCCCGAATTGCTTCT 128 487 918 Antisense
TCAAACCATATCTCCTGGATCTGGA 523 629 965 Antisense
TGGAACCGGCGGCATTTTGATCGAC 105 547 1066 Antisense
Sequence Source Affymetrix Proprietary Database