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[179044_s_at]

Description F20G4.1 /REP_DB=WormBase Gene ID /WP=CE09509 /TR=P90841 /GB=CAA99839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 73      6grp_total > 55      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 463
1 2 3 4 range
A 704
(3)
P 		407
(-1.1)
P 		432.4
(-0.8)
P 		274
(-3)
P 		430
B 736.5
(3)
P 		375.3
(-2.5)
P 		411.3
(-2)
P 		342.7
(-3)
P 		394
C 712
(3)
P 		426.3
(-1.6)
P 		517.1
(-0.1)
P 		340.1
(-3)
P 		372
avr 717.5
(3) 		402.9
(-1.7) 		453.6
(-1) 		318.9
(-3) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 477.2
(-0.1)
P 		576.1
(3)
P 		451
(-1)
P 		461.6
(-0.6)
P 		386.9
(-3)
P 		505.2
(0.8)
P 		189
B 523.4
(0.7)
P 		458.3
(-0.6)
P 		635.7
(3)
P 		487.5
(-0)
P 		341.4
(-3)
P 		550.5
(1.3)
P 		294
C 488.1
(-0)
P 		459.6
(-0.6)
P 		640.2
(3)
P 		572
(1.6)
P 		339.8
(-3)
P 		584.1
(1.9)
P 		300
avr 496.2
(0.8) 		498
(0.9) 		575.6
(3) 		507
(1.1) 		356
(-3) 		546.6
(2.2) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 256.3
(3)
P 		88.3
(-1.7)
P 		113
(-1)
P 		40.1
(-3)
P 		216
B 234.9
(3)
P 		92.7
(-2.3)
P 		95.3
(-2.2)
P 		73
(-3)
P 		162
C 235.7
(3)
P 		122.6
(-0.8)
P 		180.2
(1.1)
P 		57.4
(-3)
P 		178
avr 242.3
(3) 		101.2
(-1.6) 		129.5
(-0.6) 		56.8
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 88
(-3)
P 		204.9
(3)
P 		98.2
(-2.5)
P 		117.1
(-1.5)
P 		116.7
(-1.5)
P 		123
(-1.2)
P 		117
B 182.1
(1.2)
P 		152.6
(-1.1)
P 		154.4
(-1)
P 		129.1
(-3)
P 		138.7
(-2.2)
P 		205.3
(3)
P 		76
C 180.9
(2)
P 		140.2
(-0.9)
P 		163
(0.7)
P 		115
(-2.6)
P 		110
(-3)
P 		195.5
(3)
P 		86
avr 150.3
(0.3) 		165.9
(2) 		138.5
(-1) 		120.4
(-3) 		121.8
(-2.8) 		174.6
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179044_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2194
Sequence Type Exemplar sequence
Representative Public ID F20G4.1 NCBI
Target Description F20G4.1 /REP_DB=WormBase Gene ID /WP=CE09509 /TR=P90841 /GB=CAA99839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059784 NCBI Caenorhabditis elegans F20G4.1 (F20G4.1) mRNA, complete cds. 11/11 None
SNAP00000013792 ENSEMBL cdna:SNAP chromosome:CEL140:I:7926773:7934463:-1 11/11 None
GENEFINDER00000013799 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7926773:7934463:-1 11/11 None
F20G4.1 ENSEMBL cdna:known chromosome:CEL140:I:7926566:7934463:-1 gene:F20G4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7926703-7934394(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20G4.1
Entrez Gene 172561 Entrez gene
SwissProt P90841 EMBL-EBI
WormBase CE34296 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99839 Hypothetical protein F20G4.1 [Caenorhabditis elegans] ref|NP_492185.2| F20G4.1 [Caenorhabditis elegans] 0.0
blast CAE63724 Hypothetical protein CBG08249 [Caenorhabditis briggsae] 0.0
blast XP_419959 PREDICTED: similar to neuroblastoma-amplified protein [Gallus gallus] 9.0E-10
Sequence
Target Sequence 
>C. ELEGANS:179044_S_AT
aacaatttctgtcctacatctcattgtttgctgacgcggaacccgagaagaaacttggtg
acactatcaaaaagattatttcaaaaatgaaaaatgtggaagcaatccggctgtggactg
atgctaaatatctttcctcgactctgaacaagattcccgatggaaatcttcgagcaatca
tatcgtctgttttacaatttccaaagattggagttaaagcgtgtgaaatgtccgcagaat
ttttattggaaggagatgatacaagacctccatccaatccatttacattgtttttgttga
tgagaagcaatattgaagattttctcgaattggtggctaataagaaatcgagagacgatg
aaatcgcctacctggatcaagcagtgattcttctcgaaaacacaccaaaagtcccaccgc
ttctccttgatgccattaaaatgcgatctgaaaaaatgcatcgagctacagtaaccccag
aaccagctactccgtctaatggctctagcaccggactctcttcatacttttctaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATTTCTGTCCTACATCTCATT 172 135 4166 Antisense
ACATCTCATTGTTTGCTGACGCGGA 373 105 4181 Antisense
GCAATCCGGCTGTGGACTGATGCTA 206 321 4267 Antisense
GATGCTAAATATCTTTCCTCGACTC 500 411 4285 Antisense
TCCTCGACTCTGAACAAGATTCCCG 269 591 4300 Antisense
ACCTCCATCCAATCCATTTACATTG 502 87 4431 Antisense
GAAATCGCCTACCTGGATCAAGCAG 389 361 4525 Antisense
CGCTTCTCCTTGATGCCATTAAAAT 238 255 4583 Antisense
AATGCATCGAGCTACAGTAACCCCA 220 165 4620 Antisense
TCCGTCTAATGGCTCTAGCACCGGA 242 595 4656 Antisense
GACTCTCTTCATACTTTTCTAATAC 144 375 4679 Antisense
Sequence Source Affymetrix Proprietary Database