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[179043_at]

Description C09G9.5 /REP_DB=WormBase Gene ID /WP=CE03004 /TR=Q17875 /GB=CAA90975.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 63      4grp_high_8_8 > 20      6grp_highest_nonorm > 90      6grp_total > 92      4grp_total > 28      6grp_highest_sub > 05      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 169.8
(-0.1)
P 		191.2
(1.2)
P 		120.3
(-3)
P 		222.2
(3)
P 		102
B 162.5
(1.4)
P 		128.1
(-3)
P 		152.8
(0.2)
P 		174.8
(3)
P 		47
C 203.1
(-0.1)
P 		242.8
(3)
P 		165.8
(-3)
P 		218.9
(1.1)
P 		77
avr 178.5
(0.3) 		187.4
(1.2) 		146.3
(-3) 		205.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 193.2
(-0.8)
P 		182
(-1.6)
P 		164.4
(-3)
P 		199.3
(-0.3)
P 		242.2
(3)
P 		174.5
(-2.2)
P 		78
B 168.3
(-0.9)
P 		148.3
(-1.7)
P 		171.2
(-0.8)
P 		174
(-0.6)
P 		265.6
(3)
P 		115
(-3)
P 		151
C 226.3
(3)
P 		170.8
(-0.7)
P 		137.5
(-2.9)
P 		207.4
(1.7)
P 		221.6
(2.7)
P 		136.2
(-3)
P 		90
avr 195.9
(0.2) 		167
(-1.5) 		157.7
(-2.1) 		193.6
(0.1) 		243.1
(3) 		141.9
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 61.8
(3)
P 		41.5
(-1)
P 		31.4
(-3)
P 		32.5
(-2.8)
P 		30
B 51.8
(3)
P 		31.6
(-3)
P 		35.4
(-1.9)
P 		37.2
(-1.3)
P 		20
C 67.2
(2.5)
P 		69.8
(3)
P 		57.8
(0.8)
P 		36.9
(-3)
P 		33
avr 60.3
(3) 		47.6
(-0.1) 		41.5
(-1.5) 		35.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 35.6
(-3)
P 		64.7
(1.7)
P 		35.8
(-3)
P 		50.5
(-0.6)
P 		73.1
(3)
P 		42.5
(-1.9)
P 		38
B 58.6
(-1.5)
P 		49.4
(-2.3)
P 		41.6
(-3)
P 		46.1
(-2.6)
P 		107.9
(3)
P 		42.9
(-2.9)
P 		66
C 83.9
(3)
P 		52.1
(-0.9)
P 		35
(-3)
P 		41.7
(-2.2)
P 		71.7
(1.5)
P 		45.6
(-1.7)
P 		49
avr 59.4
(-0.2) 		55.4
(-0.7) 		37.5
(-3) 		46.1
(-1.9) 		84.2
(3) 		43.7
(-2.2) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9907
Sequence Type Exemplar sequence
Representative Public ID C09G9.5 NCBI
Target Description C09G9.5 /REP_DB=WormBase Gene ID /WP=CE03004 /TR=Q17875 /GB=CAA90975.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069140 NCBI Caenorhabditis elegans C09G9.5 (C09G9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000008798 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8887165:8888852:1 9/11 None
C09G9.5 ENSEMBL cdna:known chromosome:CEL140:IV:8886959:8888819:1 gene:C09G9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008793 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8886964-8888825(+) 96.09 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G9.5
Entrez Gene 182465 Entrez gene
SwissProt Q17875 EMBL-EBI
WormBase CE03004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90975 Hypothetical protein C09G9.5 [Caenorhabditis elegans] ref|NP_501541.1| C09G9.5 [Caenorhabditis elegans] 1.0E-118
blast CAA90975 Hypothetical protein C09G9.5 [Caenorhabditis elegans] ref|NP_501541.1| C09G9.5 [Caenorhabditis elegans] 2.0E-89
blast CAE74057 Hypothetical protein CBG21709 [Caenorhabditis briggsae] 1.0E-75
blast CAE74057 Hypothetical protein CBG21709 [Caenorhabditis briggsae] 3.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501541.1 5 35-57,90-112,125-147,157-179,199-218
C09G9.5 5 35-57,90-112,125-147,157-179,199-218
GENEFINDER00000008798 3 37-59,69-91,98-115
Sequence
Target Sequence 
>C. ELEGANS:179043_AT
aaaattcacttaaatagcctcctatttattttttttattcaattcctgaaatttgcagaa
gtttccaacactttcatcacaatgtctacaatttctgataaattatcaacggatcaaaat
tatttttcaatgccaacagcgcctaaaccaacgaagctttgtggatattttggtgttcat
aaaattgcaatatttggaatcagtttcaatgcaattttcttatttgcattttacgtttat
ggattaataagattgattcaaaaaacaccgaagaattatgttgaatttattgtaatctgc
tccatacttatcaccatgatcctcaccttcagtttaatgtttattatggcagttttccgt
gcgagacccaaatttttactaccatatatggttttgaatacgattctgttttttgcatat
gctggagcggtaatcggatcgacaatcacagttcctgatgaaattagagaagaggttaat
ggacaagatcggagttataaaattgttgatattattttattaaggcttttcttgagtatt
ccttgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTCACTTAAATAGCCTCCTAT 664 133 97 Antisense
GAAGTTTCCAACACTTTCATCACAA 83 337 154 Antisense
CCAACAGCGCCTAAACCAACGAAGC 643 273 229 Antisense
TGTAATCTGCTCCATACTTATCACC 567 559 387 Antisense
CATACTTATCACCATGATCCTCACC 160 215 399 Antisense
GATCCTCACCTTCAGTTTAATGTTT 486 413 414 Antisense
GAGACCCAAATTTTTACTACCATAT 384 335 459 Antisense
ACGATTCTGTTTTTTGCATATGCTG 221 93 496 Antisense
ATGCTGGAGCGGTAATCGGATCGAC 710 41 515 Antisense
TCGGATCGACAATCACAGTTCCTGA 59 605 530 Antisense
GCTTTTCTTGAGTATTCCTTGTTTC 380 305 621 Antisense
Sequence Source Affymetrix Proprietary Database