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[179042_at]

Description W04A8.6 /REP_DB=WormBase Gene ID /WP=CE16540 /TR=Q9XUM0 /GB=CAB04906.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 20.2
(-1.1)
A 		37.6
(3)
A 		12.3
(-3)
A 		15.4
(-2.3)
A 		25
B 8.2
(-1.9)
A 		30.9
(3)
A 		8.1
(-2)
A 		3.3
(-3)
A 		28
C 3.4
(-3)
A 		6.8
(-1.4)
A 		15.9
(3)
A 		8.7
(-0.5)
A 		13
avr 10.6
(-2.4) 		25.1
(3) 		12.1
(-1.9) 		9.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.5
(-0.7)
A 		22.3
(3)
A 		11.6
(-0.6)
A 		4.7
(-3)
A 		16.2
(0.9)
A 		10
(-1.2)
A 		18
B 10.2
(-1.1)
A 		10.5
(-1)
A 		18.5
(1.7)
A 		4.6
(-3)
A 		20.2
(2.3)
A 		22.2
(3)
A 		18
C 31.7
(3)
A 		4.8
(-3)
A 		9.5
(-2)
A 		12.1
(-1.4)
A 		5.2
(-2.9)
A 		13.8
(-1)
A 		27
avr 17.8
(3) 		12.5
(0) 		13.2
(0.4) 		7.1
(-3) 		13.9
(0.8) 		15.3
(1.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.4
(2.2)
A 		8.2
(3)
A 		3.2
(-2)
A 		2.2
(-3)
A 		6
B 2.6
(-1.3)
A 		7.6
(3)
A 		1.9
(-2)
A 		0.7
(-3)
A 		7
C 1.1
(-3)
A 		2
(-1.8)
A 		5.5
(3)
A 		1.5
(-2.5)
A 		4
avr 3.7
(0) 		5.9
(3) 		3.5
(-0.3) 		1.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.1
(-2.2)
A 		7.9
(3)
A 		2.5
(-1.8)
A 		1.2
(-3)
A 		4.9
(0.3)
A 		2.4
(-1.9)
A 		7
B 3.5
(-1.1)
A 		3.5
(-1.1)
A 		4.5
(-0.2)
A 		1.2
(-3)
A 		8.2
(2.9)
A 		8.3
(3)
A 		7
C 11.7
(3)
A 		1.5
(-3)
A 		2.4
(-2.5)
A 		2.4
(-2.5)
A 		1.7
(-2.9)
A 		4.6
(-1.2)
A 		10
avr 5.8
(3) 		4.3
(0.9) 		3.1
(-0.9) 		1.6
(-3) 		4.9
(1.7) 		5.1
(2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1429
Sequence Type Exemplar sequence
Representative Public ID W04A8.6 NCBI
Target Description W04A8.6 /REP_DB=WormBase Gene ID /WP=CE16540 /TR=Q9XUM0 /GB=CAB04906.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061024 NCBI Caenorhabditis elegans W04A8.6 (W04A8.6) mRNA, complete cds. 11/11 None
SNAP00000006530 ENSEMBL cdna:SNAP chromosome:CEL140:I:13862767:13869804:1 11/11 None
GENEFINDER00000006533 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13862767:13867951:1 11/11 None
W04A8.6 ENSEMBL cdna:known chromosome:CEL140:I:13861197:13867669:1 gene:W04A8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13861127-13867600(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04A8.6
Entrez Gene 173256 Entrez gene
SwissProt Q9XUM0 EMBL-EBI
WormBase CE16540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04906 Hypothetical protein W04A8.6 [Caenorhabditis elegans] ref|NP_493425.1| W04A8.6 [Caenorhabditis elegans] 0.0
blast CAE68008 Hypothetical protein CBG13621 [Caenorhabditis briggsae] 1.0E-146
blast CAE68008 Hypothetical protein CBG13621 [Caenorhabditis briggsae] 1.0E-140
Sequence
Target Sequence 
>C. ELEGANS:179042_AT
atttcatcatcgccgtttgaggtggaaacatcgagaagcagctcgcagcagcccggagga
gaggattcgacgattttcgagggaaatatccggaaaattggcggcggcagaagacactcg
gattcggatttgtttaaggggggtcccgacacgattagtctcacgccgagcgatactgtt
ccagtggcaccgcaaaacgagtatgtgaggctgcagaaatactcgagaacgaattcatgg
cttaaagtgggttttttgagtgaagaaaataattattttgcacaaaaaatgaaggttttc
cgatttttacaacaaaaatcgatgaaaaactatttaaaaaaaacgcgaaattccatcaat
ccagacgatgacggtggctcatcagatagttcggaagaggaacgactaagcctaatcgag
agacaattgaagaaaaagggcggtctcgtcaaatataatccgccgagaacgaaaattcac
gataaacactataaaagattcggcaaaaacgagcgttcggcgttggcagaattcgaatat
cttcaggatatgtctacagacgtctcggggctccaatcaagccctgaactcggacaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCATCATCGCCGTTTGAGGTGG 511 15 1606 Antisense
GCAGCAGCCCGGAGGAGAGGATTCG 591 313 1650 Antisense
AATTGGCGGCGGCAGAAGACACTCG 396 177 1701 Antisense
TCTCACGCCGAGCGATACTGTTCCA 497 611 1764 Antisense
TACTGTTCCAGTGGCACCGCAAAAC 87 647 1779 Antisense
GACGGTGGCTCATCAGATAGTTCGG 505 377 1975 Antisense
AGGGCGGTCTCGTCAAATATAATCC 106 57 2042 Antisense
ACGAGCGTTCGGCGTTGGCAGAATT 388 93 2114 Antisense
ATATGTCTACAGACGTCTCGGGGCT 490 21 2153 Antisense
TCTCGGGGCTCCAATCAAGCCCTGA 494 609 2168 Antisense
ATCAAGCCCTGAACTCGGACAATTG 708 25 2181 Antisense
Sequence Source Affymetrix Proprietary Database