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[179039_at]

Description K08E4.2 /REP_DB=WormBase Gene ID /WP=CE03462 /TR=Q21333 /GB=CAA92680.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 37      4grp_high_8_8 > 02      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 06      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 129
(-0.1)
P 		94.6
(-3)
P 		137.9
(0.7)
P 		165.1
(3)
P 		71
B 147.7
(2.4)
P 		99.1
(-2.6)
P 		94.9
(-3)
P 		153.6
(3)
P 		59
C 121.8
(1.4)
P 		124.6
(2.5)
P 		126
(3)
P 		110.2
(-3)
P 		16
avr 132.8
(1.3) 		106.1
(-3) 		119.6
(-0.8) 		143
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 54.9
(-3)
P 		140.2
(-0.8)
P 		137.2
(-0.9)
P 		157.8
(-0.4)
P 		239.1
(1.7)
P 		290.8
(3)
P 		236
B 121.8
(-2.8)
P 		113.9
(-3)
P 		155.9
(-2)
P 		135.2
(-2.5)
P 		259.6
(0.3)
P 		375
(3)
P 		261
C 151.3
(-2)
P 		148.4
(-2.1)
P 		97.5
(-3)
P 		211
(-0.9)
P 		293.2
(0.6)
P 		427.8
(3)
P 		330
avr 109.3
(-3) 		134.2
(-2.4) 		130.2
(-2.5) 		168
(-1.6) 		264
(0.6) 		364.5
(3) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 47
(3)
P 		20.5
(-3)
P 		36.1
(0.5)
P 		24.2
(-2.2)
P 		27
B 47.1
(3)
P 		24.5
(-2.4)
P 		22
(-3)
P 		32.7
(-0.4)
P 		25
C 40.3
(2.1)
P 		35.8
(1.1)
P 		43.9
(3)
P 		18.6
(-3)
P 		25
avr 44.8
(3) 		26.9
(-2.5) 		34
(-0.3) 		25.2
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 10.1
(-3)
P 		49.9
(0.9)
P 		29.9
(-1.1)
P 		40
(-0.1)
P 		72.1
(3)
P 		70.8
(2.9)
P 		62
B 42.4
(-2.6)
P 		37.9
(-2.9)
P 		37.9
(-2.9)
P 		35.8
(-3)
P 		105.5
(1)
P 		139.9
(3)
P 		104
C 56.1
(-1.4)
P 		45.3
(-2)
P 		24.8
(-3)
P 		42.4
(-2.1)
P 		94.9
(0.6)
P 		143.2
(3)
P 		118
avr 36.2
(-2.6) 		44.4
(-2.1) 		30.9
(-3) 		39.4
(-2.4) 		90.8
(1.1) 		118
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9123
Sequence Type Exemplar sequence
Representative Public ID K08E4.2 NCBI
Target Description K08E4.2 /REP_DB=WormBase Gene ID /WP=CE03462 /TR=Q21333 /GB=CAA92680.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069883 NCBI Caenorhabditis elegans K08E4.2 (K08E4.2) mRNA, complete cds. 11/11 None
SNAP00000000847 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12055825:12056612:-1 11/11 None
GENEFINDER00000000860 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12055825:12056612:-1 11/11 None
K08E4.2 ENSEMBL cdna:known chromosome:CEL140:IV:12055641:12056619:-1 gene:K08E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12055830-12056618(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08E4.2
Entrez Gene 178144 Entrez gene
SwissProt Q21333 EMBL-EBI
WormBase CE03462 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92680 Hypothetical protein K08E4.2 [Caenorhabditis elegans] ref|NP_502284.1| K08E4.2 [Caenorhabditis elegans] 1.0E-121
blast CAE62171 Hypothetical protein CBG06218 [Caenorhabditis briggsae] 2.0E-91
blast CAE73037 Hypothetical protein CBG20406 [Caenorhabditis briggsae] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179039_AT
ctcggagccggagacctatcagataatgaaaacaatagagaaatcgatcatcgagaatga
caatgtcgatttggaacaatatctgctcttttgggagcatgtttgcaacgtcatgtgctc
ttggggaacaattttcagctttgtcgtgaaggatgtcactgcaaaattggaaaagctcac
gcaaatgagatcgtcggatccagattcttacagaactatcatcggaatggcaacgaagga
gtcggagaatggaactattcgaaatcagaaaccaaatagaagcggcactggacatttgat
ggttcttaacagagctcttgaattcgtcatcgatttgctggatggagtgttcacgtcgaa
tgatgaaaatgtatcgacaatcgctcgttcttcttatgacaaacatctttctcaacttca
ttcttggccaatcagaactgctgtcgctgcggctctctacactttgcctcgaaaaccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGAGCCGGAGACCTATCAGATA 673 229 27 Antisense
GGAACAATATCTGCTCTTTTGGGAG 660 527 99 Antisense
CAACGTCATGTGCTCTTGGGGAACA 101 187 132 Antisense
GATCGTCGGATCCAGATTCTTACAG 376 417 215 Antisense
AGAGCTCTTGAATTCGTCATCGATT 695 69 337 Antisense
TTTGCTGGATGGAGTGTTCACGTCG 695 667 360 Antisense
ATGTATCGACAATCGCTCGTTCTTC 610 47 395 Antisense
AATCGCTCGTTCTTCTTATGACAAA 218 169 405 Antisense
TTCTCAACTTCATTCTTGGCCAATC 638 689 435 Antisense
CCAATCAGAACTGCTGTCGCTGCGG 37 277 454 Antisense
TCTACACTTTGCCTCGAAAACCAGA 105 615 482 Antisense
Sequence Source Affymetrix Proprietary Database