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[179038_at]

Description F26A3.5 /REP_DB=WormBase Gene ID /WP=CE09670 /TR=Q93596 /GB=CAB01703.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 15.4
(-3)
A 		20.6
(-1.7)
A 		25
(-0.6)
A 		39
(3)
A 		24
B 29.1
(0.8)
A 		4.5
(-3)
A 		43.1
(3)
A 		14
(-1.5)
A 		39
C 17.1
(-0.4)
A 		6.9
(-3)
A 		22.9
(1)
A 		30.7
(3)
A 		24
avr 20.5
(-0) 		10.7
(-3) 		30.3
(3) 		27.9
(2.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 62.7
(-2.3)
P 		11.8
(-3)
A 		24.4
(-2.8)
A 		54.4
(-2.4)
A 		181.7
(-0.6)
P 		429
(3)
P 		417
B 32.7
(-2.7)
A 		38.9
(-2.6)
P 		16.8
(-3)
A 		55.1
(-2.4)
A 		198.3
(-0.1)
P 		391.7
(3)
P 		375
C 7.4
(-3)
A 		45
(-2.5)
P 		42.9
(-2.5)
A 		54.9
(-2.4)
A 		201.9
(-0.4)
P 		460.2
(3)
P 		453
avr 34.3
(-2.9) 		31.9
(-2.9) 		28
(-3) 		54.8
(-2.6) 		194
(-0.5) 		427
(3) 		399
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.6
(0.3)
A 		4.5
(-3)
A 		6.5
(3)
A 		5.7
(0.6)
A 		2
B 9.3
(2.5)
A 		1.1
(-3)
A 		10
(3)
A 		3
(-1.7)
A 		9
C 5.7
(0.7)
A 		2
(-3)
A 		8
(3)
A 		5.2
(0.2)
A 		6
avr 6.9
(1.6) 		2.5
(-3) 		8.2
(3) 		4.6
(-0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 11.6
(-2.6)
P 		4.2
(-3)
A 		5.3
(-2.9)
A 		13.8
(-2.4)
A 		54.8
(0)
P 		104.4
(3)
P 		100
B 11.4
(-2.7)
A 		13
(-2.6)
P 		4.1
(-3)
A 		14.6
(-2.6)
A 		80.6
(0.2)
P 		146.1
(3)
P 		142
C 2.7
(-3)
A 		13.7
(-2.6)
P 		10.9
(-2.7)
A 		11.1
(-2.7)
A 		65.3
(-0.5)
P 		154
(3)
P 		151
avr 8.6
(-2.9) 		10.3
(-2.8) 		6.8
(-3) 		13.2
(-2.7) 		66.9
(-0.2) 		134.8
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2018
Sequence Type Exemplar sequence
Representative Public ID F26A3.5 NCBI
Target Description F26A3.5 /REP_DB=WormBase Gene ID /WP=CE09670 /TR=Q93596 /GB=CAB01703.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059733 NCBI Caenorhabditis elegans F26A3.5 (F26A3.5) mRNA, complete cds. 11/11 None
SNAP00000002471 ENSEMBL cdna:SNAP chromosome:CEL140:I:7676674:7677924:1 11/11 None
GENEFINDER00000002475 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7676674:7677924:1 11/11 None
F26A3.5 ENSEMBL cdna:known chromosome:CEL140:I:7676674:7677924:1 gene:F26A3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7676604-7677855(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A3.5
Entrez Gene 184954 Entrez gene
SwissProt Q93596 EMBL-EBI
WormBase CE09670 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01703 Hypothetical protein F26A3.5 [Caenorhabditis elegans] ref|NP_492134.1| F26A3.5 [Caenorhabditis elegans] 1.0E-170
Sequence
Target Sequence 
>C. ELEGANS:179038_AT
ccagccagtaccttcaaacttagttgtgtcgactgcaaaaaacaatacaatgtttcaaaa
tcaatgaagagtcaggctcgtaagcgtaaaattcgacaagatatggaagcagaagacgat
atgcttgatggaactggactgcatcgaatggctcttgtgaacgtgaacaccactatgcca
caggaagcaaaagcactggaggaattgtcgaaaaaactggtaatcagcgcaacattgact
ggatatgattctgttcccatcaatacgccaagcaaaagtccccaagttctttatttccaa
gtaaaaacacatgcggagttcgatttggttcaagaaaagatggacaaaaacttcatttct
caacttgaaatcgagtcacttgtgaagagcaacgaacctttcctatttccgtatggaaga
agaagacacgtcttcacaagcatcttattggctacatacttgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCCAGTACCTTCAAACTTAGTT 547 273 325 Antisense
GGAACTGGACTGCATCGAATGGCTC 677 529 454 Antisense
GCATCGAATGGCTCTTGTGAACGTG 373 309 465 Antisense
GAACGTGAACACCACTATGCCACAG 38 349 483 Antisense
GACTGGATATGATTCTGTTCCCATC 416 375 561 Antisense
GCCAAGCAAAAGTCCCCAAGTTCTT 363 275 591 Antisense
ACATGCGGAGTTCGATTTGGTTCAA 513 105 633 Antisense
GGACAAAAACTTCATTTCTCAACTT 138 527 666 Antisense
GAAGAGCAACGAACCTTTCCTATTT 614 337 708 Antisense
GACACGTCTTCACAAGCATCTTATT 652 367 749 Antisense
GCATCTTATTGGCTACATACTTGAG 543 305 764 Antisense
Sequence Source Affymetrix Proprietary Database