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[179037_at]

Description F31E9.3 /REP_DB=WormBase Gene ID /WP=CE15937 /TR=O45428 /GB=CAB07201.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 1.3
(-2.4)
A 		1.8
(-1.6)
A 		0.9
(-3)
A 		4.8
(3)
A 		4
B 2.5
(-3)
A 		14.8
(3)
A 		3.9
(-2.3)
A 		3.7
(-2.4)
A 		12
C 0.5
(-3)
A 		2.8
(-2.4)
A 		1.3
(-2.8)
A 		25.1
(3)
A 		25
avr 1.4
(-3) 		6.5
(0.1) 		2
(-2.6) 		11.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.8
(3)
A 		1.1
(-3)
A 		9.6
(2.9)
A 		1.4
(-2.8)
A 		1.7
(-2.6)
A 		4.4
(-0.7)
A 		9
B 2.6
(-2.2)
A 		1.7
(-2.7)
A 		1.4
(-2.8)
A 		13.7
(3)
A 		1
(-3)
A 		2
(-2.5)
A 		13
C 1
(-3)
A 		15.6
(3)
A 		1.1
(-3)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		2.8
(-2.3)
A 		15
avr 4.5
(1) 		6.1
(3) 		4
(0.4) 		5.5
(2.3) 		1.3
(-3) 		3.1
(-0.8) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(0.6)
A 		0.4
(-0.6)
A 		0.2
(-3)
A 		0.7
(3)
A 		1
B 0.8
(-3)
A 		3.6
(3)
A 		0.9
(-2.8)
A 		0.8
(-3)
A 		3
C 0.2
(-3)
A 		0.8
(-2.1)
A 		0.4
(-2.7)
A 		4.2
(3)
A 		4
avr 0.5
(-3) 		1.6
(1.7) 		0.5
(-3) 		1.9
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.8
(1.9)
A 		0.4
(-3)
A 		2.1
(3)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		1.1
(-0.5)
A 		2
B 0.9
(-1.9)
A 		0.6
(-2.5)
A 		0.3
(-3)
A 		3.6
(3)
A 		0.4
(-2.8)
A 		0.7
(-2.3)
A 		3
C 0.4
(-2.9)
A 		4.8
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		0.9
(-2.2)
A 		5
avr 1
(-0.6) 		1.9
(3) 		0.9
(-1) 		1.4
(1) 		0.4
(-3) 		0.9
(-1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13784
Sequence Type Exemplar sequence
Representative Public ID F31E9.3 NCBI
Target Description F31E9.3 /REP_DB=WormBase Gene ID /WP=CE15937 /TR=O45428 /GB=CAB07201.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074984 NCBI Caenorhabditis elegans F31E9.3 (F31E9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000027117 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17325420:17328745:1 11/11 None
F31E9.3 ENSEMBL cdna:known chromosome:CEL140:V:17325420:17328745:1 gene:F31E9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027114 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17325419-17328745(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31E9.3
Entrez Gene 185160 Entrez gene
SwissProt O45428 EMBL-EBI
WormBase CE15937 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07201 Hypothetical protein F31E9.3 [Caenorhabditis elegans] ref|NP_507385.1| F31E9.3 [Caenorhabditis elegans] 0.0
blast CAB07201 Hypothetical protein F31E9.3 [Caenorhabditis elegans] ref|NP_507385.1| F31E9.3 [Caenorhabditis elegans] 1.0E-153
blast CAB63438 Hypothetical protein C38D9.9 [Caenorhabditis elegans] ref|NP_507445.1| C38D9.9 [Caenorhabditis elegans] 1.0E-149
blast CAB63438 Hypothetical protein C38D9.9 [Caenorhabditis elegans] ref|NP_507445.1| C38D9.9 [Caenorhabditis elegans] 1.0E-111
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-31
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 3.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.4E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.3E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-31
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-16
Sequence
Target Sequence 
>C. ELEGANS:179037_AT
ggtctcaaacagattcagctctcaatcaacagaattttcaaaagctgctctatatatttt
gatgagaattgtgtcgaatacgaggacattccaaaactgcctagaggaacaccgaaaaaa
tgggagaagcctgtgcagaaagattactgctcggtttgtctggaagatgatgtgatccat
cgggtggcaggcgtcttggaagagatcctctgggaactacacgatccagtaaatattgat
gttttacaagaagaacttgtcggattggagcaatggaaaagagcaaagagcttgatagtt
aggccaagttattataaaaaatcttacatgcatgtcacaacggattttcaactttttgca
aacttctcgaaacttgaagctcacctgaaactttttagagaggaccatgctcgagatttg
aaagagattctcccgaaaatcccaaattttcaatcctggactctccaagctcccatagaa
gatcccgtggagatggtgaaaatcttcaagccggactatacgggcggcccgtttggaagc
gtagagtacactgctcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCTCAAACAGATTCAGCTCTCAA 394 503 1282 Antisense
CAGAAAGATTACTGCTCGGTTTGTC 441 203 1417 Antisense
ATGTGATCCATCGGGTGGCAGGCGT 5 47 1451 Antisense
GAAGAACTTGTCGGATTGGAGCAAT 9 341 1531 Antisense
TTTTTGCAAACTTCTCGAAACTTGA 308 673 1634 Antisense
GAAACTTGAAGCTCACCTGAAACTT 324 355 1650 Antisense
AATCCCAAATTTTCAATCCTGGACT 194 169 1719 Antisense
GATGGTGAAAATCTTCAAGCCGGAC 393 407 1773 Antisense
TCAAGCCGGACTATACGGGCGGCCC 583 629 1787 Antisense
GCGGCCCGTTTGGAAGCGTAGAGTA 632 293 1805 Antisense
GAAGCGTAGAGTACACTGCTCATGG 256 343 1817 Antisense
Sequence Source Affymetrix Proprietary Database