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[179036_at]

Description T16G1.1 /REP_DB=WormBase Gene ID /WP=CE20071 /TR=Q9XUQ0 /GB=CAB04725.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 35      6grp_total > 35      4grp_total > 24      6grp_cgc > 44      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 65.9
(-3)
A 		189.6
(0.3)
P 		203.6
(0.7)
P 		287.8
(3)
P 		222
B 44.8
(-3)
A 		79.5
(-2.1)
P 		136.3
(-0.6)
P 		270
(3)
P 		225
C 65.9
(-3)
M 		148.2
(-0.6)
P 		180.5
(0.4)
P 		268.2
(3)
P 		202
avr 58.9
(-3) 		139.1
(-0.8) 		173.5
(0.2) 		275.3
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 114
(3)
P 		89.5
(0.7)
P 		74.6
(-0.7)
A 		49.3
(-3)
P 		60.7
(-1.9)
P 		88.8
(0.7)
P 		65
B 89.8
(0.2)
P 		127
(3)
P 		88.5
(0.1)
P 		48.2
(-3)
P 		90.5
(0.2)
P 		99.3
(0.9)
P 		79
C 83.1
(-3)
P 		126.9
(3)
P 		110
(0.7)
P 		101
(-0.5)
P 		84.6
(-2.8)
P 		91.7
(-1.8)
P 		44
avr 95.6
(0.7) 		114.5
(3) 		91
(0.1) 		66.2
(-3) 		78.6
(-1.5) 		93.3
(0.4) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 24
(-3)
A 		41.2
(0.5)
P 		53.2
(3)
P 		42.1
(0.7)
P 		29
B 14.3
(-3)
A 		19.6
(-2.3)
P 		31.6
(-0.6)
P 		57.5
(3)
P 		43
C 21.8
(-3)
M 		42.6
(0)
P 		62.9
(3)
P 		45.2
(0.4)
P 		41
avr 20
(-3) 		34.5
(-0) 		49.2
(3) 		48.3
(2.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 21
(-0.4)
P 		31.8
(3)
P 		16.2
(-1.8)
A 		12.5
(-3)
P 		18.3
(-1.2)
P 		21.6
(-0.2)
P 		19
B 31.3
(0.8)
P 		42.3
(3)
P 		21.5
(-1.2)
P 		12.8
(-3)
P 		36.8
(1.9)
P 		37
(1.9)
P 		30
C 30.8
(0.4)
P 		38.7
(3)
P 		28
(-0.5)
P 		20.3
(-3)
P 		27.4
(-0.7)
P 		30.7
(0.4)
P 		18
avr 27.7
(0.3) 		37.6
(3) 		21.9
(-1.2) 		15.2
(-3) 		27.5
(0.3) 		29.8
(0.9) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14368
Sequence Type Exemplar sequence
Representative Public ID T16G1.1 NCBI
Target Description T16G1.1 /REP_DB=WormBase Gene ID /WP=CE20071 /TR=Q9XUQ0 /GB=CAB04725.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073830 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-67) (pqn-67) mRNA, complete cds. 11/11 None
SNAP00000020364 ENSEMBL cdna:SNAP chromosome:CEL140:V:12927031:12930587:1 11/11 None
GENEFINDER00000020380 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12927031:12930587:1 11/11 None
T16G1.1 ENSEMBL cdna:known chromosome:CEL140:V:12927031:12930587:1 gene:T16G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12927030-12930587(+) 98.13 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-67
Ensembl T16G1.1
Entrez Gene 179773 Entrez gene
SwissProt Q9XUQ0 EMBL-EBI
WormBase CE20071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04725 Hypothetical protein T16G1.1 [Caenorhabditis elegans] ref|NP_506231.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-67) [Caenorhabditis elegans] 1.0E-148
blast CAE64716 Hypothetical protein CBG09502 [Caenorhabditis briggsae] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:179036_AT
aatggaccaccgcctagaaataatggtaacaataatggaaatggacgaccgatgaaacca
ccttcatcgtctggatctggatcgaatcgaagaagtggtccaccaccaccaccgccgccg
ccaagatcatcgggtgccaatggcaatagaaacggaggtggaggaaatcgacgaaataat
aacaagaattcatctaatagtaataataacaataacttcaatggaaatggaaatggagac
ggaagttataataacaataatgacaactgtgattttgaaaatcgatgtggagggcaagga
ggatttgagaatggaaatgagaatcagagatttagtagtcggaaacagcctcctccgaaa
ccatccgctaataacaataatggagacagaaagttaccacgttccgttccatacatacct
cctcaatccccacccaccttcaacgattgccctaaaggagctgagtatctagatggattc
aatgctccaaaatgtctacctccagcaattgattcatgtccaatgagtcataacaaatgc
cgttattcatctcggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGACCACCGCCTAGAAATAATG 661 161 1513 Antisense
ATGGACGACCGATGAAACCACCTTC 599 43 1553 Antisense
TCGAATCGAAGAAGTGGTCCACCAC 366 599 1594 Antisense
GCCGCCAAGATCATCGGGTGCCAAT 331 285 1629 Antisense
TTAGTAGTCGGAAACAGCCTCCTCC 524 677 1844 Antisense
CCTCCGAAACCATCCGCTAATAACA 253 265 1864 Antisense
GAGACAGAAAGTTACCACGTTCCGT 459 383 1895 Antisense
CCACCTTCAACGATTGCCCTAAAGG 495 271 1946 Antisense
TGCTCCAAAATGTCTACCTCCAGCA 108 583 1995 Antisense
TACCTCCAGCAATTGATTCATGTCC 674 649 2009 Antisense
CAAATGCCGTTATTCATCTCGGTTC 199 193 2046 Antisense
Sequence Source Affymetrix Proprietary Database