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[179035_s_at]

Description C35A5.8 /REP_DB=WormBase Gene ID /WP=CE15680 /TR=Q18476 /GB=CAA94911.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 66      6grp_total > 64      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 996
1 2 3 4 range
A 1578.1
(3)
P 		1359.6
(1.4)
P 		1302.9
(1)
P 		749.7
(-3)
P 		828
B 1745.2
(3)
P 		1338.9
(0.1)
P 		1257.7
(-0.5)
P 		906.5
(-3)
P 		839
C 1588.4
(3)
P 		1254.5
(0.5)
P 		1593.7
(3)
P 		782.9
(-3)
P 		811
avr 1637.2
(3) 		1317.7
(0.7) 		1384.8
(1.2) 		813
(-3) 		824

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 600
1 2 3 4 5 6 range
A 1377.7
(-2.1)
P 		1391.7
(-1.9)
P 		1685.7
(1.9)
P 		1767.7
(3)
P 		1307.3
(-3)
P 		1729.6
(2.5)
P 		460
B 1386.9
(-0.6)
P 		1391.5
(-0.6)
P 		1548.4
(1.3)
P 		1689.2
(3)
P 		1188.3
(-3)
P 		1618.2
(2.1)
P 		501
C 1224
(-2.4)
P 		1407.1
(-0.6)
P 		1766.5
(3)
P 		1668.3
(2)
P 		1167.3
(-3)
P 		1730.7
(2.6)
P 		599
avr 1329.5
(-1.7) 		1396.8
(-0.8) 		1666.9
(2.5) 		1708.4
(3) 		1221
(-3) 		1692.8
(2.8) 		487
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 574.6
(3)
P 		295.1
(-0.6)
P 		340.6
(-0)
P 		109.7
(-3)
P 		465
B 556.5
(3)
P 		330.7
(-0.7)
P 		291.4
(-1.4)
P 		193.2
(-3)
P 		363
C 525.8
(2.6)
P 		360.7
(0.2)
P 		555.4
(3)
P 		132
(-3)
P 		423
avr 552.3
(3) 		328.8
(-0.3) 		395.8
(0.7) 		145
(-3) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 254
(-3)
P 		495
(3)
P 		367.1
(-0.2)
P 		448.3
(1.8)
P 		394.5
(0.5)
P 		421.1
(1.2)
P 		241
B 482.6
(-0.2)
P 		463.2
(-0.7)
P 		376
(-3)
P 		447.4
(-1.1)
P 		482.8
(-0.2)
P 		603.4
(3)
P 		227
C 453.7
(-0.1)
P 		429.3
(-0.7)
P 		449.6
(-0.2)
P 		335.5
(-3)
P 		377.7
(-2)
P 		579.4
(3)
P 		244
avr 396.8
(-3) 		462.5
(-0.1) 		397.6
(-3) 		410.4
(-2.4) 		418.3
(-2.1) 		534.6
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179035_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12075
Sequence Type Exemplar sequence
Representative Public ID C35A5.8 NCBI
Target Description C35A5.8 /REP_DB=WormBase Gene ID /WP=CE15680 /TR=Q18476 /GB=CAA94911.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073297 NCBI Caenorhabditis elegans C35A5.8 (C35A5.8) mRNA, complete cds. 11/11 None
SNAP00000025030 ENSEMBL cdna:SNAP chromosome:CEL140:V:10524732:10528451:-1 11/11 None
GENEFINDER00000025043 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10524732:10528721:-1 11/11 None
C35A5.8 ENSEMBL cdna:known chromosome:CEL140:V:10524576:10528489:-1 gene:C35A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10524731-10528451(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35A5.8
Entrez Gene 179467 Entrez gene
SwissProt Q18476 EMBL-EBI
WormBase CE15680 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250712_AT Ran-binding protein, putative at
CANINE:1596309_AT similar to Exportin-7 (Ran-binding protein 16) cfa
CANINE_2:CFAAFFX.15689.1.S1_AT similar to Exportin-7 (Ran-binding protein 16) cfa
CANINE_2:CFAAFFX.15726.1.S1_S_AT similar to Exportin-7 (Ran-binding protein 16) cfa
DROSGENOME1:142914_AT dm
DROSGENOME1:145162_AT dm
DROSOPHILA_2:1623857_AT dm
DROSGENOME1:151718_AT dm
DROSOPHILA_2:1623873_AT dm
CHICKEN:GGA.18966.1.S1_S_AT exportin 7 gga
CHICKEN:GGA.4167.1.S1_S_AT exportin 7 gga
CHICKEN:GGA.4167.1.S1_X_AT exportin 7 gga
CHICKEN:GGAAFFX.11757.1.S1_AT exportin 7 gga
HG-U133A:212166_AT exportin 7 hs
HG-U133_PLUS_2:212166_AT exportin 7 hs
HG-U133A_2:212166_AT exportin 7 hs
HG-U133_PLUS_2:208459_S_AT exportin 7 hs
HG-U133A:208459_S_AT exportin 7 hs
HG-U133A_2:208459_S_AT exportin 7 hs
HU35KSUBB:RC_H94256_AT exportin 7 hs
HU35KSUBC:RC_H72240_AT exportin 7 hs
U133_X3P:G11999173_3P_A_AT exportin 7 hs
U133_X3P:HS.308435.0.A1_3P_AT exportin 7 hs
U133_X3P:HS.172685.0.S1_3P_AT exportin 7 hs
HG-U133_PLUS_2:240168_AT exportin 7 hs
HG-U133B:240168_AT exportin 7 hs
HG-U95AV2:40824_AT exportin 7 hs
HG-U95C:52584_AT exportin 7 hs
HG-U133_PLUS_2:235796_AT Exportin 7 hs
HG-U133B:235796_AT Exportin 7 hs
HU35KSUBA:W26322_AT Exportin 7 hs
U133_X3P:HS.313825.0.A1_3P_AT Exportin 7 hs
MOUSE430_2:1442836_AT exportin 7 mm
MOE430B:1442836_AT exportin 7 mm
MU11KSUBA:AA265415_G_AT exportin 7 mm
MU11KSUBA:AA265415_AT exportin 7 mm
MG-U74AV2:95526_AT exportin 7 mm
MG-U74BV2:111758_AT exportin 7 mm
MOE430A:1439411_A_AT exportin 7 mm
MOUSE430A_2:1439411_A_AT exportin 7 mm
MOUSE430_2:1439411_A_AT exportin 7 mm
MOE430A:1415682_AT exportin 7 mm
MOE430B:1415682_AT exportin 7 mm
MOUSE430A_2:1415682_AT exportin 7 mm
MOUSE430_2:1415682_AT exportin 7 mm
MOE430B:1435814_AT exportin 7 mm
MOUSE430_2:1435814_AT exportin 7 mm
MOE430B:1446826_AT exportin 7 mm
MOUSE430_2:1446826_AT exportin 7 mm
MG-U74AV2:102476_F_AT Exportin 7, mRNA (cDNA clone MGC:32487 IMAGE:5053250) mm
MU19KSUBA:TC19604_AT Exportin 7, mRNA (cDNA clone MGC:32487 IMAGE:5053250) mm
MU19KSUBB:TC32247_AT Exportin 7, mRNA (cDNA clone MGC:32487 IMAGE:5053250) mm
RG-U34A:RC_AA800663_AT exportin 7 (predicted) rn
RG-U34B:RC_AA901042_AT exportin 7 (predicted) rn
RAE230A:1371516_AT exportin 7 (predicted) rn
RAT230_2:1371516_AT exportin 7 (predicted) rn
RAE230B:1397747_AT exportin 7 (predicted) rn
RAT230_2:1397747_AT exportin 7 (predicted) rn
RAE230B:1397312_AT exportin 7 (predicted) rn
RAT230_2:1397312_AT exportin 7 (predicted) rn
RG-U34B:RC_AA946425_AT Exportin 7 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA94911 Hypothetical protein C35A5.8 [Caenorhabditis elegans] ref|NP_505698.1| C35A5.8 [Caenorhabditis elegans] 0.0
blast CAE64833 Hypothetical protein CBG09629 [Caenorhabditis briggsae] 0.0
blast NP_055839 exportin 7 [Homo sapiens] gb|AAH30785.1| Exportin 7 [Homo sapiens] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179035_S_AT
tatgccgtttgtgacgaatctctcggttgacgtgttttgtgcacttcttcgatcaattca
ctcgggacttagttctgtggatgcaatcgtgataacatcagcttgttcatcactggatac
gattctcaactatttgtaccgtcggctgacaagatcgacgccaccaacgaataaagtcgg
catggatccagaaggtgacaatattcttattgcaatcaagcaacatcctgacattctcgc
aaagatgcttcaagctgtgataacgttgatgatgtttggagaagtgaaatgtcaatggag
tctttcccgtccacttctcggattgattcttatccaggaagacgtatactctgatatgaa
gcgcgagttgacatcccaacaaacatacgatcgtcaagcagattttgatatgcttttcac
tcaactgatgtctaacgtggagatgaatttgacagttaaaaataaggacacattcacaca
aaacctcactcgattccgtcgtgatattgctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCCGTTTGTGACGAATCTCTCG 621 657 2679 Antisense
GAATCTCTCGGTTGACGTGTTTTGT 370 329 2694 Antisense
GTGCACTTCTTCGATCAATTCACTC 43 481 2717 Antisense
AATTCACTCGGGACTTAGTTCTGTG 186 177 2733 Antisense
TCAACTATTTGTACCGTCGGCTGAC 110 631 2804 Antisense
TCGGCTGACAAGATCGACGCCACCA 299 607 2820 Antisense
TCAAGCAACATCCTGACATTCTCGC 225 631 2894 Antisense
AATGTCAATGGAGTCTTTCCCGTCC 153 163 2966 Antisense
GAAGCGCGAGTTGACATCCCAACAA 680 343 3036 Antisense
CATTCACACAAAACCTCACTCGATT 39 217 3149 Antisense
CTCGATTCCGTCGTGATATTGCTCT 414 231 3167 Antisense
Sequence Source Affymetrix Proprietary Database