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[179034_s_at]

Description M03B6.3 /REP_DB=WormBase Gene ID /WP=CE23873 /TR=Q93894 /GB=CAB54307.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 705
1 2 3 4 range
A 6.6
(-3)
A 		501.4
(2.1)
P 		583.7
(3)
P 		6.8
(-3)
A 		577
B 8.8
(-3)
A 		539.8
(2.2)
P 		619.2
(3)
P 		8.5
(-3)
A 		611
C 7.2
(-3)
A 		711.7
(3)
P 		642.9
(2.4)
P 		16.8
(-2.9)
A 		705
avr 7.5
(-3) 		584.3
(2.7) 		615.3
(3) 		10.7
(-3) 		608

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 200.3
(-1.5)
P 		475.8
(3)
P 		277
(-0.2)
P 		344.4
(0.9)
P 		222
(-1.1)
P 		106.5
(-3)
M 		369
B 233.5
(-0.4)
P 		392.8
(3)
P 		249
(-0.1)
P 		386.4
(2.9)
P 		188.4
(-1.4)
P 		114.3
(-3)
M 		279
C 266
(1)
P 		353.8
(3)
P 		338.7
(2.7)
P 		311
(2)
P 		261.6
(0.9)
P 		89.7
(-3)
P 		264
avr 233.3
(-0.4) 		407.5
(3) 		288.2
(0.6) 		347.3
(1.8) 		224
(-0.6) 		103.5
(-3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 2.4
(-2.9)
A 		108.8
(1.3)
P 		152.6
(3)
P 		1
(-3)
A 		152
B 2.8
(-3)
A 		133.3
(2.6)
P 		143.5
(3)
P 		1.8
(-3)
A 		142
C 2.4
(-3)
A 		204.6
(2.5)
P 		224.1
(3)
P 		2.8
(-3)
A 		222
avr 2.5
(-3) 		148.9
(2.1) 		173.4
(3) 		1.9
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 36.9
(-2.5)
P 		169.2
(3)
P 		60.3
(-1.6)
P 		87.3
(-0.4)
P 		67
(-1.3)
P 		25.9
(-3)
M 		143
B 81.2
(-0.4)
P 		130.8
(3)
P 		60.5
(-1.8)
P 		102.4
(1.1)
P 		76.6
(-0.7)
P 		42.6
(-3)
M 		88
C 98.6
(2.3)
P 		108
(3)
P 		86.2
(1.3)
P 		62.5
(-0.5)
P 		84.6
(1.2)
P 		30
(-3)
P 		78
avr 72.2
(-0.7) 		136
(3) 		69
(-0.9) 		84.1
(-0) 		76.1
(-0.5) 		32.8
(-3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179034_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17434
Sequence Type Exemplar sequence
Representative Public ID M03B6.3 NCBI
Target Description M03B6.3 /REP_DB=WormBase Gene ID /WP=CE23873 /TR=Q93894 /GB=CAB54307.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077909 NCBI Caenorhabditis elegans M03B6.3 (M03B6.3) mRNA, complete cds. 11/11 None
M03B6.3 ENSEMBL cdna:known chromosome:CEL140:X:13861211:13864213:-1 gene:M03B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13861298-13864209(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03B6.3
Entrez Gene 181498 Entrez gene
SwissProt Q93894 EMBL-EBI
WormBase CE23873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54307 Hypothetical protein M03B6.3 [Caenorhabditis elegans] emb|CAB01764.2| Hypothetical protein M03B6.3 [Caenorhabditis elegans] ref|NP_510310.1| M03B6.3 [Caenorhabditis elegans] 0.0
blast CAE63074 Hypothetical protein CBG07359 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179034_S_AT
tcatatccggtattctccaactccggtggttactgaagctactccagtcattccaccgag
cacttcagttgacagagaagacgatgaatttgtttccaagtgtgactgtgagcaaatttc
ccttgagaaaatgaacgggaagtggcttatggctttggcttctccaaacgtggtccaagc
aatccaagaaaaagcaaacgttcttttagagggaacagaggcccttacatgctcaagatt
cgacgtttccgcgggaaaacattcggttgccgcacaagatgctcgattaatctggcaatt
cagaactcacggagctccaaagctctttagacttcgtggtagtgcgctgacaatggatca
tgaatcagttagagttcaaatggcagattttaacggagaaaatttcagcttcccattctg
tgttctcaaatccggagaaacttcttcctcttatgaacatcttcttgtgaccaacagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATATCCGGTATTCTCCAACTCCG 432 619 1314 Antisense
ACTCCGGTGGTTACTGAAGCTACTC 684 97 1333 Antisense
TTCCACCGAGCACTTCAGTTGACAG 518 699 1364 Antisense
GGGAAGTGGCTTATGGCTTTGGCTT 409 455 1450 Antisense
TTGGCTTCTCCAAACGTGGTCCAAG 476 693 1468 Antisense
GGAACAGAGGCCCTTACATGCTCAA 595 527 1525 Antisense
ATGCTCAAGATTCGACGTTTCCGCG 176 43 1542 Antisense
TTCGGTTGCCGCACAAGATGCTCGA 198 695 1575 Antisense
GACTTCGTGGTAGTGCGCTGACAAT 710 371 1643 Antisense
GAAACTTCTTCCTCTTATGAACATC 141 357 1750 Antisense
GAACATCTTCTTGTGACCAACAGCC 379 351 1768 Antisense
Sequence Source Affymetrix Proprietary Database