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[179033_at]

Description T10C6.9 /REP_DB=WormBase Gene ID /WP=CE16384 /TR=O45771 /GB=CAB07665.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 1.9
(-3)
A 		4.4
(-2.6)
A 		5
(-2.6)
A 		44
(3)
A 		42
B 15.8
(-0.9)
A 		13.7
(-1.3)
A 		5
(-3)
A 		35.8
(3)
A 		31
C 3.5
(-3)
A 		11.9
(-2)
A 		15.8
(-1.5)
A 		53.6
(3)
A 		50
avr 7.1
(-3) 		10
(-2.5) 		8.6
(-2.8) 		44.5
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 10.8
(-0.5)
A 		21.9
(3)
A 		2.9
(-3)
A 		5.7
(-2.1)
A 		21.5
(2.9)
A 		4.2
(-2.6)
A 		19
B 21.7
(3)
A 		8.5
(-1)
A 		17.8
(1.8)
A 		4.1
(-2.4)
A 		2
(-3)
A 		4
(-2.4)
A 		20
C 1
(-3)
A 		33.5
(2.8)
A 		34.6
(3)
A 		29.7
(2.1)
A 		11.5
(-1.1)
A 		9.7
(-1.4)
A 		34
avr 11.2
(-1) 		21.3
(3) 		18.4
(1.9) 		13.2
(-0.2) 		11.7
(-0.8) 		6
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		1
(-2.7)
A 		1.3
(-2.4)
A 		6.4
(3)
A 		6
B 5
(0.6)
A 		3.4
(-0.9)
A 		1.1
(-3)
A 		7.6
(3)
A 		7
C 1.2
(-3)
A 		3.4
(-1.3)
A 		5.5
(0.3)
A 		9
(3)
A 		8
avr 2.3
(-3) 		2.6
(-2.7) 		2.6
(-2.7) 		7.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2
(-1.8)
A 		7.8
(3)
A 		0.6
(-3)
A 		1.5
(-2.3)
A 		6.5
(1.9)
A 		1
(-2.7)
A 		7
B 7.6
(3)
A 		2.8
(-1.2)
A 		4.3
(0.1)
A 		1.1
(-2.7)
A 		0.8
(-3)
A 		1.5
(-2.4)
A 		7
C 0.4
(-3)
A 		10.2
(3)
A 		8.8
(2.1)
A 		6
(0.4)
A 		3.7
(-1)
A 		3.2
(-1.3)
A 		10
avr 3.3
(-1.3) 		6.9
(3) 		4.6
(0.2) 		2.9
(-1.8) 		3.7
(-0.8) 		1.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12769
Sequence Type Exemplar sequence
Representative Public ID T10C6.9 NCBI
Target Description T10C6.9 /REP_DB=WormBase Gene ID /WP=CE16384 /TR=O45771 /GB=CAB07665.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074628(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074628 NCBI Caenorhabditis elegans T10C6.9 (T10C6.9) mRNA, complete cds. 11/11 None
T10C6.9 ENSEMBL cdna:known chromosome:CEL140:V:16036794:16037964:-1 gene:T10C6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072161 1/11 Cross Hyb Matching Probes None
SNAP00000000278 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000283 1/11 Cross Hyb Matching Probes None
SNAP00000027911 5/11 Cross Hyb Matching Probes None
SNAP00000027912 2/11 Cross Hyb Matching Probes None
F29G9.7 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16036793-16037964(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10C6.9
Entrez Gene 188378 Entrez gene
SwissProt O45771 EMBL-EBI
WormBase CE16384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07665 Hypothetical protein T10C6.9 [Caenorhabditis elegans] ref|NP_507029.1| T10C6.9 [Caenorhabditis elegans] 1.0E-138
blast AAK68353 Hypothetical protein F29G9.7 [Caenorhabditis elegans] ref|NP_504562.2| F29G9.7 [Caenorhabditis elegans] 1.0E-104
blast T31804 hypothetical protein F29G9.7 - Caenorhabditis elegans 4.0E-73
Sequence
Target Sequence 
>C. ELEGANS:179033_AT
caatcttttttccctgactatgtgcttttggagggaataatcttcacccgaaatcgtgtg
tgcatcatggatgcaaaatgggtcactctctaccatctcaagtcgctcaaatttattcgg
ctcgtgctgtacgattctatgctaacagaaagagacgtgaacgagttcatcaagcactgg
ctcaatgggaaatgggtacaattgcaccgattcgagattcgtcacactagtcgtgaggga
tttgatttggaaatcctcagatcgagattaaatgtgaagaaatggaataaaaatctcaga
aatggatgttatataatggactgtcatcaaaatccctatctcctggacactcgtaaagaa
ctcgatatgattaaacctgacggaacgcttgcaacaattgtgaatagacctgatacattt
cggttcattgtctggcccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTTTTTTCCCTGACTATGTGC 601 181 226 Antisense
TGGAGGGAATAATCTTCACCCGAAA 93 549 254 Antisense
GGTACAATTGCACCGATTCGAGATT 692 503 420 Antisense
GCACCGATTCGAGATTCGTCACACT 398 315 429 Antisense
AGTCGTGAGGGATTTGATTTGGAAA 381 59 454 Antisense
GATTTGGAAATCCTCAGATCGAGAT 594 427 469 Antisense
TGTCATCAAAATCCCTATCTCCTGG 421 559 547 Antisense
CATCAAAATCCCTATCTCCTGGACA 210 211 550 Antisense
GGACACTCGTAAAGAACTCGATATG 87 527 570 Antisense
AACTCGATATGATTAAACCTGACGG 177 139 584 Antisense
ATTTCGGTTCATTGTCTGGCCCGAT 318 17 642 Antisense
Sequence Source Affymetrix Proprietary Database