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[179032_at]

Description C08F8.3 /REP_DB=WormBase Gene ID /WP=CE05250 /TR=Q17829 /GB=CAA97425.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 61.9
(-3)
A 		118.8
(-0.8)
A 		195.4
(2)
P 		220.6
(3)
P 		159
B 74.4
(-3)
A 		132.7
(0.1)
A 		109.5
(-1.1)
A 		185.8
(3)
P 		111
C 40.2
(-3)
A 		224.7
(3)
P 		119.2
(-0.4)
A 		213.7
(2.6)
P 		185
avr 58.8
(-3) 		158.7
(1.1) 		141.4
(0.4) 		206.7
(3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 921
1 2 3 4 5 6 range
A 85.6
(-2.9)
A 		69
(-3)
A 		105.6
(-2.8)
P 		307.5
(-1.4)
P 		600.7
(0.5)
P 		990.3
(3)
P 		921
B 103.8
(-2.9)
M 		92.2
(-3)
A 		108.2
(-2.9)
P 		300.3
(-1.4)
P 		614
(1)
P 		875.2
(3)
P 		783
C 77.4
(-3)
A 		145.2
(-2.5)
A 		163.4
(-2.4)
P 		340.6
(-1.1)
P 		532.9
(0.3)
P 		910
(3)
P 		833
avr 88.9
(-3) 		102.1
(-2.9) 		125.7
(-2.7) 		316.1
(-1.4) 		582.5
(0.5) 		925.2
(3) 		836
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 22.5
(-3)
A 		25.8
(-2.3)
A 		51.1
(3)
P 		32.3
(-0.9)
P 		29
B 23.7
(-3)
A 		32.8
(0.4)
A 		25.4
(-2.4)
A 		39.6
(3)
P 		16
C 13.3
(-3)
A 		64.6
(3)
P 		41.6
(0.3)
A 		36
(-0.3)
P 		51
avr 19.8
(-3) 		41.1
(3) 		39.4
(2.5) 		36
(1.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 15.8
(-3)
A 		24.5
(-2.8)
A 		23
(-2.8)
P 		78
(-1.3)
P 		181.3
(1.4)
P 		241.1
(3)
P 		225
B 36.1
(-2.8)
M 		30.7
(-2.9)
A 		26.3
(-3)
P 		79.5
(-1.9)
P 		249.4
(1.5)
P 		326.4
(3)
P 		300
C 28.7
(-3)
A 		44.3
(-2.7)
A 		41.6
(-2.7)
P 		68.5
(-2.1)
P 		172.4
(0.1)
P 		304.6
(3)
P 		276
avr 26.9
(-3) 		33.2
(-2.9) 		30.3
(-2.9) 		75.3
(-1.9) 		201
(1) 		290.7
(3) 		264
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8910
Sequence Type Exemplar sequence
Representative Public ID C08F8.3 NCBI
Target Description C08F8.3 /REP_DB=WormBase Gene ID /WP=CE05250 /TR=Q17829 /GB=CAA97425.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069689 NCBI Caenorhabditis elegans C08F8.3 (C08F8.3) mRNA, complete cds. 11/11 None
SNAP00000012975 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11155034:11156426:1 11/11 None
GENEFINDER00000012992 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11155034:11156509:1 11/11 None
C08F8.3 ENSEMBL cdna:known chromosome:CEL140:IV:11155029:11156546:1 gene:C08F8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11155039-11156432(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F8.3
Entrez Gene 178023 Entrez gene
SwissProt Q17829 EMBL-EBI
WormBase CE30596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97425 Hypothetical protein C08F8.3 [Caenorhabditis elegans] ref|NP_502090.2| C08F8.3 [Caenorhabditis elegans] 0.0
blast CAE62141 Hypothetical protein CBG06186 [Caenorhabditis briggsae] 5.0E-61
blast CAE62141 Hypothetical protein CBG06186 [Caenorhabditis briggsae] 1.0E-58
blast CAE62141 Hypothetical protein CBG06186 [Caenorhabditis briggsae] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:179032_AT
gaagacgagctcagtggctgcgactgacgtacaaaagaagcaaatgaaagaggccataga
acagctgcggaaggatgccgagcagtttgagagagaattcaaagactcccaaagccgtcc
agttgcaccgatgctgccgcctaatgaaatctcagaaaatcgaaaagaaatcaacttggg
actggctcttccgtcaaggcactctcagccttctattcgcacggttgatgttgtaacgac
tactcctgcgcaaatgatgccaactgcctcatcgttcaggattcctttcgcccaagtctc
aaaagcgcctgttgttgctccctcttcgcaacttcagcagcagcagcagcaaccatgtag
ctcaaaccagactgctcgcattgggaactttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACGAGCTCAGTGGCTGCGACT 647 339 684 Antisense
CGATGCTGCCGCCTAATGAAATCTC 96 249 812 Antisense
GAAATCAACTTGGGACTGGCTCTTC 53 361 850 Antisense
TCAAGGCACTCTCAGCCTTCTATTC 287 633 877 Antisense
TGATGTTGTAACGACTACTCCTGCG 182 567 909 Antisense
AAATGATGCCAACTGCCTCATCGTT 24 121 935 Antisense
CCTCATCGTTCAGGATTCCTTTCGC 705 265 950 Antisense
TCCTTTCGCCCAAGTCTCAAAAGCG 15 579 966 Antisense
CTCAAAAGCGCCTGTTGTTGCTCCC 232 227 981 Antisense
TGTAGCTCAAACCAGACTGCTCGCA 701 559 1039 Antisense
GACTGCTCGCATTGGGAACTTTTTG 614 373 1053 Antisense
Sequence Source Affymetrix Proprietary Database