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[179030_at]

Description C47F8.3 /REP_DB=WormBase Gene ID /WP=CE17572 /TR=O45591 /GB=CAB04502.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 49.9
(-0.7)
A 		34.4
(-3)
A 		41.3
(-2)
A 		74
(3)
A 		40
B 7.2
(-3)
A 		34.2
(2.5)
A 		28.4
(1.4)
A 		36.4
(3)
A 		29
C 12.4
(-3)
A 		44.6
(3)
A 		38.9
(1.9)
A 		44.7
(3)
A 		32
avr 23.2
(-3) 		37.7
(0.1) 		36.2
(-0.3) 		51.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 89
(3)
A 		44.3
(-1.7)
A 		32.3
(-3)
M 		40.2
(-2.2)
A 		43.3
(-1.8)
A 		40.2
(-2.2)
A 		57
B 33.7
(2.4)
A 		28.9
(1.1)
A 		16
(-2.5)
A 		35.9
(3)
A 		19.4
(-1.6)
A 		14.3
(-3)
A 		22
C 31.3
(-0.7)
A 		34.7
(-0.4)
A 		8.9
(-3)
A 		67.5
(3)
A 		25
(-1.4)
A 		33.8
(-0.5)
A 		59
avr 51.3
(3) 		36
(0.1) 		19.1
(-3) 		47.9
(2.4) 		29.2
(-1.1) 		29.4
(-1.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 18.2
(3)
A 		7.5
(-3)
A 		10.8
(-1.1)
A 		10.8
(-1.1)
A 		11
B 2.3
(-3)
A 		8.5
(3)
A 		6.6
(1.2)
A 		7.8
(2.3)
A 		6
C 4.1
(-3)
A 		12.8
(2.5)
A 		13.6
(3)
A 		7.5
(-0.9)
A 		10
avr 8.2
(-3) 		9.6
(1) 		10.3
(3) 		8.7
(-1.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 16.4
(3)
A 		15.8
(2.6)
A 		7
(-3)
M 		10.2
(-1)
A 		13.1
(0.9)
A 		9.8
(-1.2)
A 		9
B 11.7
(3)
A 		9.6
(1.4)
A 		3.9
(-3)
A 		9.5
(1.3)
A 		7.9
(0.1)
A 		5.3
(-1.9)
A 		8
C 11.6
(1.9)
A 		10.6
(1.4)
A 		2.3
(-3)
A 		13.6
(3)
A 		8.1
(0.1)
A 		11.3
(1.8)
A 		11
avr 13.2
(3) 		12
(2.2) 		4.4
(-3) 		11.1
(1.6) 		9.7
(0.6) 		8.8
(0) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.434
Sequence Type Exemplar sequence
Representative Public ID C47F8.3 NCBI
Target Description C47F8.3 /REP_DB=WormBase Gene ID /WP=CE17572 /TR=O45591 /GB=CAB04502.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060712 NCBI Caenorhabditis elegans C47F8.3 (C47F8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000044667 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12323315:12323982:-1 10/11 None
SNAP00000044662 ENSEMBL cdna:SNAP chromosome:CEL140:I:12323451:12323982:-1 9/11 None
C47F8.3 ENSEMBL cdna:known chromosome:CEL140:I:12323315:12324810:-1 gene:C47F8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12323245-12324741(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47F8.3
Entrez Gene 183559 Entrez gene
SwissProt O45591 EMBL-EBI
WormBase CE17572 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15841 Hypothetical protein C47F8.3 [Caenorhabditis elegans] emb|CAB04502.1| Hypothetical protein C47F8.3 [Caenorhabditis elegans] ref|NP_493113.1| C47F8.3 [Caenorhabditis elegans] 0.0
blast CAB05616 Hypothetical protein T15D6.5 [Caenorhabditis elegans] ref|NP_493136.1| T15D6.5 [Caenorhabditis elegans] 1.0E-106
blast CAA15841 Hypothetical protein C47F8.3 [Caenorhabditis elegans] emb|CAB04502.1| Hypothetical protein C47F8.3 [Caenorhabditis elegans] ref|NP_493113.1| C47F8.3 [Caenorhabditis elegans] 1.0E-98
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 1.0E-96
blast CAA15841 Hypothetical protein C47F8.3 [Caenorhabditis elegans] emb|CAB04502.1| Hypothetical protein C47F8.3 [Caenorhabditis elegans] ref|NP_493113.1| C47F8.3 [Caenorhabditis elegans] 3.0E-76
blast CAB05616 Hypothetical protein T15D6.5 [Caenorhabditis elegans] ref|NP_493136.1| T15D6.5 [Caenorhabditis elegans] 9.0E-53
blast CAB05616 Hypothetical protein T15D6.5 [Caenorhabditis elegans] ref|NP_493136.1| T15D6.5 [Caenorhabditis elegans] 6.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 4.1E-67
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 3.0E-113
Sequence
Target Sequence 
>C. ELEGANS:179030_AT
taacttgccgtttaagactctagccctgcttctttatggaaccagcaaggcctctcaatt
caagattatcggaaaaatcgatgatgatgtgatgttctttccggatcagctccttccgat
gttagatcgaaattttgttaactcgaatactcttagcatctacggacatttatcaactgc
cgaggagttggttcttcggaataaaactgaaccatggtacgtaccggagactgcctacaa
ctgcacagtttatccagtttatgtgatgggtccgatctatttagtgactaaagatgctgc
cagtttgattcttgataatgcaaatcatcagcaatttatgactgtcgaagatgcgttgat
aactgggatcattgctcagaagctcggaatcaggagatatagtcttccgaatgtttttcg
gcacagaaatgatatcaccgaagggcaggatgttcttgcatggcatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTTGCCGTTTAAGACTCTAGCC 21 637 504 Antisense
TAGCCCTGCTTCTTTATGGAACCAG 559 647 524 Antisense
TATGGAACCAGCAAGGCCTCTCAAT 606 655 538 Antisense
GATGTGATGTTCTTTCCGGATCAGC 280 409 589 Antisense
GATCAGCTCCTTCCGATGTTAGATC 322 421 607 Antisense
ACTCGAATACTCTTAGCATCTACGG 526 97 644 Antisense
CATGGTACGTACCGGAGACTGCCTA 55 209 716 Antisense
GATGGGTCCGATCTATTTAGTGACT 512 407 768 Antisense
GATGCTGCCAGTTTGATTCTTGATA 586 413 796 Antisense
GGGATCATTGCTCAGAAGCTCGGAA 584 495 868 Antisense
GGCAGGATGTTCTTGCATGGCATGT 644 535 947 Antisense
Sequence Source Affymetrix Proprietary Database