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[179028_at]

Description C43F9.5 /REP_DB=WormBase Gene ID /WP=CE19733 /TR=Q9XUG6 /GB=CAB05152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 53      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 173.1
(3)
A 		129.1
(1.4)
A 		80.3
(-0.3)
A 		3.3
(-3)
A 		170
B 132.1
(3)
A 		131.6
(3)
A 		95.4
(1.1)
A 		16.5
(-3)
A 		116
C 135.7
(3)
A 		51
(-1.2)
A 		82
(0.4)
P 		13.5
(-3)
A 		122
avr 147
(3) 		103.9
(1.1) 		85.9
(0.3) 		11.1
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 140.8
(0.3)
A 		154.1
(0.7)
A 		224.2
(3)
P 		121.8
(-0.3)
A 		80
(-1.6)
A 		37.3
(-3)
A 		187
B 98.8
(-0.7)
A 		114.3
(-0.2)
A 		215.9
(3)
A 		145.6
(0.8)
A 		62.1
(-1.9)
A 		27.1
(-3)
A 		189
C 96.8
(-1.1)
A 		190
(3)
M 		139.5
(0.8)
A 		121
(-0.1)
A 		77.9
(-2)
A 		54.6
(-3)
A 		135
avr 112.1
(-0.2) 		152.8
(1.4) 		193.2
(3) 		129.5
(0.5) 		73.3
(-1.7) 		39.7
(-3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 63
(3)
A 		28
(-0.4)
A 		21
(-1)
A 		0.5
(-3)
A 		63
B 42.1
(3)
A 		32.5
(1.5)
A 		22.1
(-0.1)
A 		3.5
(-3)
A 		39
C 44.9
(3)
A 		14.7
(-1.3)
A 		28.6
(0.7)
P 		2.3
(-3)
A 		43
avr 50
(3) 		25.1
(-0.1) 		23.9
(-0.3) 		2.1
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 26
(-0.8)
A 		54.8
(3)
A 		48.8
(2.2)
P 		30.9
(-0.1)
A 		24.1
(-1)
A 		9.1
(-3)
A 		46
B 34.4
(0.4)
A 		38
(1)
A 		52.4
(3)
A 		38.6
(1)
A 		25.2
(-0.9)
A 		10.1
(-3)
A 		42
C 35.9
(-0.3)
A 		58
(3)
M 		35.5
(-0.4)
A 		24.3
(-2.1)
A 		25.2
(-2)
A 		18.3
(-3)
A 		40
avr 32.1
(0.1) 		50.3
(3) 		45.6
(2.3) 		31.3
(-0) 		24.8
(-1) 		12.5
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9293
Sequence Type Exemplar sequence
Representative Public ID C43F9.5 NCBI
Target Description C43F9.5 /REP_DB=WormBase Gene ID /WP=CE19733 /TR=Q9XUG6 /GB=CAB05152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069556 NCBI Caenorhabditis elegans C43F9.5 (C43F9.5) mRNA, complete cds. 11/11 None
C43F9.5 ENSEMBL cdna:known chromosome:CEL140:IV:10589396:10590693:-1 gene:C43F9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019772 6/11 Cross Hyb Matching Probes None
GENEFINDER00000019776 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10589401-10590699(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43F9.5
Entrez Gene 183415 Entrez gene
SwissProt Q9XUG6 EMBL-EBI
WormBase CE19733 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05152 Hypothetical protein C43F9.5 [Caenorhabditis elegans] ref|NP_501957.1| C43F9.5 [Caenorhabditis elegans] 1.0E-147
blast CAE60755 Hypothetical protein CBG04441 [Caenorhabditis briggsae] 1.0E-106
blast AAK68451 Hypothetical protein Y41D4A.1 [Caenorhabditis elegans] ref|NP_500134.1| Y41D4A.1 [Caenorhabditis elegans] 3.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501957.1 1 7-26
C43F9.5 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:179028_AT
tatcagtgtactccatacgctgccaactccgtgtgtctgaacaattgttgctgtacaaat
ccagttgtgacaactcgagctccaatcatcccaactaccacaactagatctgtttctgca
ttggcatactgctataatggacaacgcacgcaagttcgttgcacaacttctgtagattgc
gcagccggtcaaacatgcatgaatgggatttgctgtaccacaacaggaaatgaatataca
ggatcttgtggaggacttccagctatttcagcatgtggtacaggtcagacgtgcggatct
ttcagatgtacatcttcaaactattgctgtgaatgccaatatggaagaactgcgggtctg
tgttccaatggctgcccaactggatattcatgcaattcaaacactggcaatggttactgc
tgtgccacttgtgcttctgggcgtccaccatttggttcttgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAGTGTACTCCATACGCTGCCA 438 659 241 Antisense
GCCAACTCCGTGTGTCTGAACAATT 518 277 262 Antisense
AGTTGTGACAACTCGAGCTCCAATC 535 63 303 Antisense
AACGCACGCAAGTTCGTTGCACAAC 368 145 383 Antisense
TGTAGATTGCGCAGCCGGTCAAACA 260 559 411 Antisense
GAGGACTTCCAGCTATTTCAGCATG 333 405 491 Antisense
ACAGGTCAGACGTGCGGATCTTTCA 625 105 520 Antisense
AGAACTGCGGGTCTGTGTTCCAATG 391 71 586 Antisense
GTTCCAATGGCTGCCCAACTGGATA 422 439 602 Antisense
GCAATGGTTACTGCTGTGCCACTTG 690 321 647 Antisense
GCGTCCACCATTTGGTTCTTGTTTC 484 291 681 Antisense
Sequence Source Affymetrix Proprietary Database