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[179027_at]

Description W02D9.4 /REP_DB=WormBase Gene ID /WP=CE14460 /TR=O02336 /GB=CAB03471.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 10.7
(-2.6)
A 		5.7
(-3)
A 		12.1
(-2.5)
A 		80.4
(3)
A 		75
B 26.2
(-1.8)
A 		42
(-0.7)
A 		7.6
(-3)
A 		99.3
(3)
P 		92
C 32.5
(-2.6)
P 		21.5
(-3)
A 		30.3
(-2.6)
A 		170
(3)
P 		149
avr 23.1
(-2.6) 		23.1
(-2.6) 		16.7
(-3) 		116.6
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 45.2
(-1.8)
A 		24.8
(-3)
A 		26.4
(-2.9)
A 		61.8
(-0.8)
A 		79.1
(0.3)
A 		124.8
(3)
P 		100
B 10.9
(-3)
A 		25.2
(-2.1)
A 		29.3
(-1.9)
A 		62.4
(0.1)
A 		109.6
(3)
P 		97.7
(2.3)
P 		99
C 11
(-2.9)
A 		27.9
(-2.4)
A 		7.9
(-3)
A 		48.8
(-1.8)
A 		118.2
(0.4)
P 		205.2
(3)
P 		197
avr 22.4
(-2.9) 		26
(-2.8) 		21.2
(-3) 		57.7
(-1.2) 		102.3
(1) 		142.6
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 3.9
(-1.5)
A 		1.2
(-3)
A 		3.2
(-1.9)
A 		11.8
(3)
A 		11
B 8.4
(-1)
A 		10.4
(-0.3)
A 		1.8
(-3)
A 		21.2
(3)
P 		19
C 10.8
(-1.8)
P 		6.2
(-3)
A 		10.6
(-1.8)
A 		28.7
(3)
P 		23
avr 7.7
(-2) 		5.9
(-2.7) 		5.2
(-3) 		20.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 8.3
(-2.4)
A 		8.8
(-2.2)
A 		5.7
(-3)
A 		15.7
(-0.6)
A 		23.9
(1.4)
A 		30.4
(3)
P 		25
B 3.8
(-3)
A 		8.4
(-2.3)
A 		7.1
(-2.5)
A 		16.5
(-1.1)
A 		44.5
(3)
P 		36.4
(1.8)
P 		41
C 4.1
(-2.8)
A 		8.5
(-2.4)
A 		2
(-3)
A 		9.8
(-2.3)
A 		38.2
(0.3)
P 		68.7
(3)
P 		67
avr 5.4
(-2.9) 		8.6
(-2.4) 		4.9
(-3) 		14
(-1.6) 		35.5
(1.6) 		45.2
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.627
Sequence Type Exemplar sequence
Representative Public ID W02D9.4 NCBI
Target Description W02D9.4 /REP_DB=WormBase Gene ID /WP=CE14460 /TR=O02336 /GB=CAB03471.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060778 NCBI Caenorhabditis elegans W02D9.4 (W02D9.4) mRNA, complete cds. 11/11 None
W02D9.4 ENSEMBL cdna:known chromosome:CEL140:I:12545828:12547076:-1 gene:W02D9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003932 3/11 Cross Hyb Matching Probes None
GENEFINDER00000003944 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12545758-12547007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D9.4
Entrez Gene 189120 Entrez gene
SwissProt O02336 EMBL-EBI
WormBase CE14460 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03471 Hypothetical protein W02D9.4 [Caenorhabditis elegans] ref|NP_493179.1| W02D9.4 [Caenorhabditis elegans] 1.0E-174
blast AAB09095 Hypothetical protein ZK154.5 [Caenorhabditis elegans] ref|NP_509316.1| ZK154.5 [Caenorhabditis elegans] 2.0E-48
blast CAE72920 Hypothetical protein CBG20240 [Caenorhabditis briggsae] 8.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493179.1 2 246-268,281-303
W02D9.4 2 246-268,281-303
Sequence
Target Sequence 
>C. ELEGANS:179027_AT
ggatgtcaaacattccgctcagtcaagaaagtgctcgaaacggatttgaaacgcggaaaa
ctgtcaatccttccagaattcgaatttctcgagcaaaatgagtcagaatctacatcgcac
gaggaagtcatgaaaagtttcgaatatttcgcgcaaagcagcagctcccggagtaaaaaa
gacgccaataaaagctccaagaatttgtcgtcaaattttctcgccgcgcatggtattaaa
atccaatcagaaatggataatatcatttatattcgcttccttcctgattctaactcaact
ttctttgttttttcctgttattcactgtatttgttcacaaatttgttgttgttgaatttg
aaattactatttataaacgttctttctcaagtaatttatttaaaaatgcagtgctttttt
cctaatctgaaagaaattttgcttttcttgttcggattcttcccacagggagctttttta
tcgaaaaagtcaataaaaactacggtgcattttcaaggcgcatggcagaactttttcgac
gggtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTCAAACATTCCGCTCAGTCA 302 515 442 Antisense
GAGTCAGAATCTACATCGCACGAGG 707 397 541 Antisense
AAATTTTCTCGCCGCGCATGGTATT 73 117 654 Antisense
ATATCATTTATATTCGCTTCCTTCC 249 21 701 Antisense
TTCCTTCCTGATTCTAACTCAACTT 634 697 718 Antisense
GTTTTTTCCTGTTATTCACTGTATT 132 449 748 Antisense
AAATGCAGTGCTTTTTTCCTAATCT 235 119 845 Antisense
TTTGCTTTTCTTGTTCGGATTCTTC 544 665 879 Antisense
TTCCCACAGGGAGCTTTTTTATCGA 442 695 901 Antisense
GGTGCATTTTCAAGGCGCATGGCAG 529 499 945 Antisense
TGGCAGAACTTTTTCGACGGGTCTC 541 541 964 Antisense
Sequence Source Affymetrix Proprietary Database