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[179026_at]

Description C17G1.2 /REP_DB=WormBase Gene ID /WP=CE08281 /TR=Q93240 /GB=CAB01672.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 10.5
(-2.7)
A 		51.2
(0.6)
A 		6.3
(-3)
A 		81.5
(3)
A 		75
B 36.9
(3)
A 		29.3
(1.3)
A 		10.6
(-3)
A 		35.5
(2.7)
A 		26
C 6.5
(-3)
A 		22.8
(-1.7)
A 		35.6
(-0.7)
A 		82.8
(3)
P 		76
avr 18
(-2.9) 		34.4
(-0.9) 		17.5
(-3) 		66.6
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 59.5
(-2.6)
A 		54.2
(-2.7)
A 		40.1
(-3)
A 		40.9
(-3)
A 		325.3
(3)
P 		208.3
(0.5)
P 		285
B 40
(-2.8)
A 		57.6
(-2.5)
P 		44.3
(-2.8)
A 		31
(-3)
A 		377.1
(3)
P 		202.2
(-0)
P 		346
C 19.1
(-3)
A 		26.1
(-2.8)
A 		67.2
(-1.9)
P 		38.9
(-2.6)
A 		290.6
(3)
P 		189.8
(0.8)
P 		272
avr 39.5
(-2.9) 		46
(-2.8) 		50.5
(-2.7) 		36.9
(-3) 		331
(3) 		200.1
(0.3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.8
(-1.8)
A 		11.1
(2.5)
A 		1.7
(-3)
A 		11.9
(3)
A 		10
B 11.8
(3)
A 		7.2
(0)
A 		2.5
(-3)
A 		7.6
(0.3)
A 		9
C 2.1
(-3)
A 		6.6
(-0.7)
A 		12.4
(2.2)
A 		14
(3)
P 		12
avr 5.9
(-2.6) 		8.3
(-0.1) 		5.5
(-3) 		11.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 11
(-2.8)
A 		19.3
(-2.3)
A 		8.7
(-3)
A 		10.4
(-2.9)
A 		98.1
(3)
P 		50.7
(-0.2)
P 		89
B 13.9
(-2.8)
A 		19.2
(-2.5)
P 		10.8
(-2.9)
A 		8.2
(-3)
A 		153.2
(3)
P 		75.4
(-0.2)
P 		145
C 7.1
(-3)
A 		8
(-2.9)
A 		17.1
(-2.3)
P 		7.8
(-3)
A 		94
(3)
P 		63.5
(0.9)
P 		87
avr 10.7
(-2.9) 		15.5
(-2.6) 		12.2
(-2.8) 		8.8
(-3) 		115.1
(3) 		63.2
(0.1) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16308
Sequence Type Exemplar sequence
Representative Public ID C17G1.2 NCBI
Target Description C17G1.2 /REP_DB=WormBase Gene ID /WP=CE08281 /TR=Q93240 /GB=CAB01672.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077264 NCBI Caenorhabditis elegans C17G1.2 (C17G1.2) mRNA, complete cds. 11/11 None
SNAP00000020417 ENSEMBL cdna:SNAP chromosome:CEL140:X:9921488:9922696:1 11/11 None
GENEFINDER00000020427 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9921488:9922696:1 11/11 None
C17G1.2 ENSEMBL cdna:known chromosome:CEL140:X:9921488:9922696:1 gene:C17G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9921487-9922696(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17G1.2
Entrez Gene 182741 Entrez gene
SwissProt Q93240 EMBL-EBI
WormBase CE08281 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01672 Hypothetical protein C17G1.2 [Caenorhabditis elegans] ref|NP_509665.1| C17G1.2 [Caenorhabditis elegans] 1.0E-151
blast CAE58746 Hypothetical protein CBG01935 [Caenorhabditis briggsae] 3.0E-40
blast CAA93763 Hypothetical protein C47D12.5 [Caenorhabditis elegans] ref|NP_496495.1| C47D12.5 [Caenorhabditis elegans] 1.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509665.1 1 184-206
C17G1.2 1 184-206
SNAP00000020417 1 184-206
GENEFINDER00000020427 1 184-206
Sequence
Target Sequence 
>C. ELEGANS:179026_AT
gatgccttgtaatggttcctgtgttacaataaccgtggaaaaacaaaaagggttggatga
atacacgtatgcaggatcactgcaagagtgttctgatcaactgatctacgagagtccaga
tttgccggagtatatagactttaaatcattctctaaaaacgcagtctatgtagccaaacg
aagtggtcaccgaataacttacaattttacacgccatagcctgattgatcatgacgtgta
ctattctgctcgcgagatctcagatgcaatcaatactttgaagaaaatgaaaaattgcaa
tgagtcatattttctgaaaacaaaagttttgctcctgattggagctacaattgcatgcag
tgttctgcttctggctgtaatgaaaatgcttcacagaagaagagtgtctaaaaggatcag
cattgccaacagagatgcgagaacaaggaatattgtaattgcaatgaatgaaattgacca
ggaaaataacattgtagcacaggaacccggagtatctgagaatcaaaatcaagaccccga
aacagagctccaagaggacatgtgcacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCCTTGTAATGGTTCCTGTGTT 65 415 237 Antisense
ACGAGAGTCCAGATTTGCCGGAGTA 598 93 344 Antisense
AAACGCAGTCTATGTAGCCAAACGA 708 125 393 Antisense
AACTTACAATTTTACACGCCATAGC 323 139 432 Antisense
TACACGCCATAGCCTGATTGATCAT 280 643 444 Antisense
GATCATGACGTGTACTATTCTGCTC 326 421 463 Antisense
GTACTATTCTGCTCGCGAGATCTCA 84 461 474 Antisense
GCATGCAGTGTTCTGCTTCTGGCTG 61 311 589 Antisense
TGTAGCACAGGAACCCGGAGTATCT 652 555 729 Antisense
AAATCAAGACCCCGAAACAGAGCTC 96 117 762 Antisense
AGCTCCAAGAGGACATGTGCACTTT 397 81 782 Antisense
Sequence Source Affymetrix Proprietary Database