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[179025_at]

Description F41D3.9 /REP_DB=WormBase Gene ID /WP=CE16028 /TR=O45513 /GB=CAB04380.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.8
(-3)
A 		4.6
(-1.7)
A 		5.7
(0)
A 		7.6
(3)
A 		4
B 9.8
(3)
A 		6.5
(-0.4)
A 		4
(-3)
A 		9.1
(2.3)
A 		6
C 11.3
(3)
A 		5.4
(-1.7)
A 		3.9
(-2.9)
A 		3.8
(-3)
A 		8
avr 8.3
(3) 		5.5
(-1.4) 		4.5
(-3) 		6.8
(0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.8
(3)
A 		3.8
(-2.7)
A 		9.3
(1.8)
A 		3.4
(-3)
A 		9.2
(1.7)
A 		3.9
(-2.6)
A 		7
B 7
(3)
A 		4.8
(-1.4)
A 		5.8
(0.6)
A 		7
(3)
A 		4
(-3)
A 		4.5
(-2)
A 		3
C 8.3
(-1.9)
A 		8.1
(-2)
A 		5.4
(-3)
A 		8
(-2)
A 		21.2
(3)
A 		8.8
(-1.7)
A 		16
avr 8.7
(0.2) 		5.6
(-3) 		6.8
(-1.8) 		6.1
(-2.5) 		11.5
(3) 		5.7
(-2.9) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.4
(1.8)
A 		1
(-3)
A 		1.5
(3)
A 		1.1
(-1.8)
A 		1
B 3.1
(3)
A 		1.6
(-1.1)
A 		0.9
(-3)
A 		1.9
(-0.3)
A 		2
C 3.7
(3)
A 		1.5
(-1.3)
A 		1.4
(-1.5)
A 		0.6
(-3)
A 		3
avr 2.7
(3) 		1.4
(-2.2) 		1.3
(-2.6) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2
(0.5)
A 		1.3
(-1.7)
A 		2
(0.5)
A 		0.9
(-3)
A 		2.8
(3)
A 		0.9
(-3)
A 		2
B 2.4
(3)
A 		1.6
(-1.8)
A 		1.4
(-3)
A 		1.9
(0)
A 		1.6
(-1.8)
A 		1.7
(-1.2)
A 		1
C 3.1
(-1.1)
A 		2.5
(-1.8)
A 		1.4
(-3)
A 		1.6
(-2.8)
A 		6.9
(3)
A 		3
(-1.3)
A 		6
avr 2.5
(-0.4) 		1.8
(-2.2) 		1.6
(-2.7) 		1.5
(-3) 		3.8
(3) 		1.9
(-2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.714
Sequence Type Exemplar sequence
Representative Public ID F41D3.9 NCBI
Target Description F41D3.9 /REP_DB=WormBase Gene ID /WP=CE16028 /TR=O45513 /GB=CAB04380.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060698 NCBI Caenorhabditis elegans F41D3.9 (F41D3.9) mRNA, complete cds. 11/11 None
GENEFINDER00000037788 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12275621:12282749:-1 11/11 None
SNAP00000037776 ENSEMBL cdna:SNAP chromosome:CEL140:I:12281103:12282749:-1 11/11 None
F41D3.9 ENSEMBL cdna:known chromosome:CEL140:I:12281103:12282749:-1 gene:F41D3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12281033-12282680(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41D3.9
Entrez Gene 185609 Entrez gene
WormBase CE16028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 0.0
blast CAB04376 Hypothetical protein F41D3.10 [Caenorhabditis elegans] emb|CAB04381.2| Hypothetical protein F41D3.5 [Caenorhabditis elegans] ref|NP_493098.1| F41D3.10 [Caenorhabditis elegans] ref|NP_493094.1| F41D3.5 [Caenorhabditis elegans] 0.0
blast CAB04108 Hypothetical protein F14B6.5 [Caenorhabditis elegans] ref|NP_493089.2| F14B6.5 [Caenorhabditis elegans] 0.0
blast CAB05619 Hypothetical protein T15D6.9 [Caenorhabditis elegans] ref|NP_493140.1| T15D6.9 [Caenorhabditis elegans] 1.0E-113
blast CAB04978 Hypothetical protein ZK1053.1 [Caenorhabditis elegans] ref|NP_493319.1| ZK1053.1 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 6.5E-5
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493099.1 1 7-26
F41D3.9 1 7-26
GENEFINDER00000037788 9 7-26,386-408,431-450,492-514,521-538,578-600,621-643,653-672,677-699
SNAP00000037776 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:179025_AT
tttcgagttccgagtcttcaacacttctcagtacccgagctttgtgaacaactggctcac
ctacaacttcaagccactgctcatggcgcagatgctcaaggagtacaaagccgtatggtg
gatcgatgcgcatattgaattacttaagtcgaatatttcgaggaatctacaaaaggagat
aattctcaagagaaatagttcttacttcgcctccgtcgtatccttatctgatactagtca
tagcaattttgcagttctaaatccagcagtccttacctactttccaacaagctccatgag
gcttcttcagcgccagagacatgtcgccgccggattgatcttcctcccaaggaccagata
taccatgcaattatttaaatggtggatcctgtgcgctcttacagaggagtgcatgaaccc
gccaggatctcggctgcggtgtgtgttccggcgggatcggtacaagcatccggggcattg
cttcagatttgaccaatctgttctgaaccttcttctgctcaacgatttccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGAGTTCCGAGTCTTCAACACT 640 667 453 Antisense
TTCTCAGTACCCGAGCTTTGTGAAC 538 689 477 Antisense
GGCTCACCTACAACTTCAAGCCACT 141 537 506 Antisense
AGCCACTGCTCATGGCGCAGATGCT 690 83 524 Antisense
GAGAAATAGTTCTTACTTCGCCTCC 486 391 642 Antisense
TTACCTACTTTCCAACAAGCTCCAT 78 669 725 Antisense
CAAGCTCCATGAGGCTTCTTCAGCG 485 185 740 Antisense
TGATCTTCCTCCCAAGGACCAGATA 99 565 788 Antisense
TAAATGGTGGATCCTGTGCGCTCTT 437 641 828 Antisense
GTGTGTTCCGGCGGGATCGGTACAA 449 483 893 Antisense
CTTCTTCTGCTCAACGATTTCCAAG 570 221 961 Antisense
Sequence Source Affymetrix Proprietary Database