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[179023_at]

Description K08G2.2 /REP_DB=WormBase Gene ID /WP=CE11962 /TR=Q93866 /GB=CAB03191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 04      4grp_total > 20      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 63.7
(-0.9)
A 		38.3
(-2.1)
A 		18.6
(-3)
A 		144.9
(3)
P 		126
B 43
(-2.8)
P 		78.5
(3)
P 		41.5
(-3)
A 		77.7
(2.9)
P 		37
C 50
(0.3)
P 		75.1
(2.1)
M 		1.8
(-3)
A 		88.6
(3)
P 		87
avr 52.2
(-0.7) 		64
(0.1) 		20.6
(-3) 		103.7
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 95.9
(3)
P 		49.3
(-2)
P 		53
(-1.6)
P 		52.2
(-1.7)
P 		60.7
(-0.8)
P 		40.5
(-3)
A 		55
B 42.8
(-1)
P 		59.1
(1.1)
M 		43.9
(-0.9)
P 		27.6
(-3)
M 		73.9
(3)
P 		36.5
(-1.8)
P 		46
C 46.5
(1.1)
P 		64.9
(2.8)
P 		16
(-1.9)
A 		66.7
(3)
A 		30
(-0.5)
A 		4.1
(-3)
A 		63
avr 61.7
(3) 		57.8
(2.3) 		37.6
(-1.2) 		48.8
(0.8) 		54.9
(1.8) 		27
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.2
(3)
A 		8.3
(-1.9)
A 		4.9
(-3)
A 		21.2
(2.3)
P 		18
B 13.7
(-0.5)
P 		19.4
(3)
P 		9.6
(-3)
A 		16.6
(1.3)
P 		10
C 16.6
(1.6)
P 		21.6
(3)
M 		0.6
(-3)
A 		14.9
(1.1)
P 		21
avr 17.8
(3) 		16.4
(2.3) 		5
(-3) 		17.6
(2.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.7
(2.6)
P 		17.5
(2.4)
P 		11.5
(-1.8)
P 		13.2
(-0.6)
P 		18.3
(3)
P 		9.8
(-3)
A 		9
B 14.9
(-1)
P 		19.7
(0.3)
M 		10.7
(-2.1)
P 		7.3
(-3)
M 		30
(3)
P 		13.6
(-1.3)
P 		23
C 17.2
(2.2)
P 		19.8
(3)
P 		4.1
(-2.1)
A 		13.4
(0.9)
A 		9.7
(-0.3)
A 		1.4
(-3)
A 		18
avr 16.6
(1.5) 		19
(2.8) 		8.8
(-2.7) 		11.3
(-1.4) 		19.3
(3) 		8.3
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179023_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12643
Sequence Type Exemplar sequence
Representative Public ID K08G2.2 NCBI
Target Description K08G2.2 /REP_DB=WormBase Gene ID /WP=CE11962 /TR=Q93866 /GB=CAB03191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08G2.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15848696:15849890:-1 gene:K08G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15848832-15849890(-) 100.0 100.0
Public Domain and Genome References
Ensembl K08G2.2
Sequence
Target Sequence 
>C. ELEGANS:179023_AT
taaccatgccagtcttgtttttgccagtttgtggaggccgcccgcttggtattctttcat
gctttggcgttccagtttccgtgcaaacttatgttggcatttcgatacttggagtgataa
ttgctacaattctaatattcctgaagaccgtcgataccgattggttcacgaaaaatcagt
gtattccaaccaatttttttgaccatcccaagttctttttacttgatctcactggaaact
acatagttatttgcattgttggcatgttgagtctcctaatctttcaaatgtttgtgcaaa
ttgcgttgatttttcgtcaattgttaaaacacacacccatctctagaaatacacagcgtc
tacaaaaacagtattttgttgccatgagcttacaattcgtcatcccagtcgttatcattg
cttttccggttgcttatattgtgctctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCATGCCAGTCTTGTTTTTGCC 253 639 173 Antisense
TTTTGCCAGTTTGTGGAGGCCGCCC 423 667 191 Antisense
TATTCTTTCATGCTTTGGCGTTCCA 63 665 222 Antisense
ATTCCTGAAGACCGTCGATACCGAT 635 3 309 Antisense
AGTTCTTTTTACTTGATCTCACTGG 50 65 383 Antisense
TTGTTGGCATGTTGAGTCTCCTAAT 487 705 428 Antisense
GAGTCTCCTAATCTTTCAAATGTTT 613 399 441 Antisense
TTGTTAAAACACACACCCATCTCTA 620 707 493 Antisense
GTTGCCATGAGCTTACAATTCGTCA 148 441 550 Antisense
TACAATTCGTCATCCCAGTCGTTAT 384 641 563 Antisense
TCCGGTTGCTTATATTGTGCTCTCA 272 595 597 Antisense
Sequence Source Affymetrix Proprietary Database