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[179022_at]

Description C50F4.1 /REP_DB=WormBase Gene ID /WP=CE26799 /TR=Q18739 /GB=CAA94736.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 22      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 652.1
(3)
P 		87.7
(-3)
P 		169.7
(-2.1)
P 		369.3
(-0)
P 		564
B 397
(1.3)
P 		141.7
(-2.5)
P 		108.8
(-3)
P 		507.3
(3)
P 		399
C 706.7
(3)
P 		160.9
(-3)
P 		202
(-2.5)
P 		566.8
(1.5)
P 		546
avr 585.3
(3) 		130.1
(-3) 		160.2
(-2.6) 		481.1
(1.6) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 298.2
(-0.8)
P 		418.2
(1.3)
P 		517.7
(3)
P 		294.3
(-0.8)
P 		239.1
(-1.8)
P 		168.2
(-3)
P 		350
B 475.9
(1.9)
P 		533.5
(3)
P 		474.1
(1.8)
P 		309.1
(-1.4)
P 		330.1
(-1)
P 		226
(-3)
P 		308
C 581
(3)
P 		478.9
(0.9)
P 		305.9
(-2.6)
P 		340
(-1.9)
P 		387
(-1)
P 		287.6
(-3)
P 		293
avr 451.7
(2.4) 		476.9
(3) 		432.6
(1.9) 		314.5
(-0.9) 		318.7
(-0.8) 		227.3
(-3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 237.4
(3)
P 		19
(-3)
P 		44.4
(-2.3)
P 		54.1
(-2)
P 		218
B 126.6
(3)
P 		35
(-2.4)
P 		25.2
(-3)
P 		108.1
(1.9)
P 		101
C 233.9
(3)
P 		46.3
(-3)
P 		70.4
(-2.2)
P 		95.6
(-1.4)
P 		188
avr 199.3
(3) 		33.4
(-3) 		46.7
(-2.5) 		85.9
(-1.1) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 55
(-2.2)
P 		148.7
(3)
P 		112.7
(1)
P 		74.6
(-1.1)
P 		72.1
(-1.3)
P 		41
(-3)
P 		108
B 165.6
(2.2)
P 		177.6
(3)
P 		115.1
(-0.9)
P 		81.9
(-3)
P 		134.1
(0.3)
P 		84.3
(-2.8)
P 		96
C 215.3
(3)
P 		146.1
(0.2)
P 		77.8
(-2.6)
P 		68.4
(-3)
P 		125.2
(-0.7)
P 		96.3
(-1.9)
P 		147
avr 145.3
(2.1) 		157.5
(3) 		101.9
(-1) 		75
(-2.9) 		110.5
(-0.4) 		73.9
(-3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11275
Sequence Type Exemplar sequence
Representative Public ID C50F4.1 NCBI
Target Description C50F4.1 /REP_DB=WormBase Gene ID /WP=CE26799 /TR=Q18739 /GB=CAA94736.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073054 NCBI Caenorhabditis elegans C50F4.1 (C50F4.1) mRNA, complete cds. 11/11 A 
SNAP00000009308 ENSEMBL cdna:SNAP chromosome:CEL140:V:9529429:9531719:1 11/11 None
GENEFINDER00000009324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9529195:9531719:1 11/11 None
C50F4.1 ENSEMBL cdna:known chromosome:CEL140:V:9529377:9531834:1 gene:C50F4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9529182-9531719(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F4.1
Entrez Gene 179333 Entrez gene
SwissProt Q18739 EMBL-EBI
WormBase CE26799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94736 Hypothetical protein C50F4.1 [Caenorhabditis elegans] ref|NP_505455.1| C50F4.1 [Caenorhabditis elegans] 0.0
blast CAE72189 Hypothetical protein CBG19297 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 4.6E-5
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 4.6E-5
Sequence
Target Sequence 
>C. ELEGANS:179022_AT
actactacagaagttgcagactacttcatgaatccatcctcagttattgaaaaagttgga
attttgactcattacttggaagattggaaagatgaagatgcagatgaaaaggaaaaacat
aatgttatcgcacatggaagattgacagctgagatttgcagatttgatgaggatgggaat
ttggtagagatcacagaatgggaaaacattcatcttggaaatccagtggaggatttagca
aatttgattgtttcatctgcagatgtcgacattcgacgaaaaaagttcatgaaaatattt
caagtctatttttatgcacttgttgacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTACAGAAGTTGCAGACTACT 459 101 868 Antisense
GCAGACTACTTCATGAATCCATCCT 9 313 883 Antisense
CATGAATCCATCCTCAGTTATTGAA 341 211 894 Antisense
GTTGGAATTTTGACTCATTACTTGG 616 435 922 Antisense
CGCACATGGAAGATTGACAGCTGAG 672 253 996 Antisense
GACAGCTGAGATTTGCAGATTTGAT 114 343 1011 Antisense
ATGGGAATTTGGTAGAGATCACAGA 119 51 1040 Antisense
AAAACATTCATCTTGGAAATCCAGT 59 131 1070 Antisense
CAAATTTGATTGTTTCATCTGCAGA 66 195 1106 Antisense
TCATCTGCAGATGTCGACATTCGAC 495 621 1120 Antisense
TCTATTTTTATGCACTTGTTGACTA 351 615 1172 Antisense
Sequence Source Affymetrix Proprietary Database