[Home] | [Total List]

[179021_at]

Description F35E8.2 /REP_DB=WormBase Gene ID /WP=CE15954 /TR=O45454 /GB=CAB04298.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 28
(-3)
A 		30.7
(-2.7)
A 		47.3
(-0.9)
A 		83.9
(3)
A 		56
B 29.7
(3)
A 		23.7
(1.4)
A 		7
(-3)
A 		16.7
(-0.4)
A 		23
C 49.1
(-1)
A 		34.7
(-2)
A 		19.5
(-3)
A 		109
(3)
M 		90
avr 35.6
(-1.5) 		29.7
(-2.3) 		24.6
(-3) 		69.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 56.4
(3)
A 		15.2
(-3)
A 		29.8
(-0.9)
A 		42.5
(1)
A 		24.2
(-1.7)
A 		48.2
(1.8)
A 		41
B 59.9
(3)
A 		11.8
(-2.7)
A 		54.6
(2.4)
A 		9.3
(-3)
A 		11.3
(-2.8)
A 		56.5
(2.6)
A 		51
C 46.2
(1.7)
A 		10.4
(-2.4)
A 		14.2
(-2)
A 		26.9
(-0.5)
A 		5.2
(-3)
A 		57.6
(3)
A 		52
avr 54.2
(3) 		12.5
(-3) 		32.9
(-0.1) 		26.2
(-1) 		13.6
(-2.8) 		54.1
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.2
(0.7)
A 		6.7
(-3)
A 		12.4
(3)
A 		12.3
(2.9)
A 		6
B 9.5
(3)
A 		5.8
(0.2)
A 		1.6
(-3)
A 		3.6
(-1.5)
A 		8
C 16.2
(1.9)
A 		10
(-1.3)
A 		6.8
(-3)
A 		18.4
(3)
M 		12
avr 12
(3) 		7.5
(-2.3) 		6.9
(-3) 		11.4
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 10.4
(1.8)
A 		5.4
(-3)
A 		6.5
(-2)
A 		10.8
(2.1)
A 		7.3
(-1.2)
A 		11.7
(3)
A 		6
B 20.9
(2.9)
A 		3.9
(-2.5)
A 		13.3
(0.5)
A 		2.5
(-3)
A 		4.6
(-2.3)
A 		21.1
(3)
A 		19
C 17.1
(2.3)
A 		3.2
(-2.5)
A 		3.6
(-2.4)
A 		5.4
(-1.7)
A 		1.7
(-3)
A 		19.3
(3)
A 		18
avr 16.1
(2.4) 		4.2
(-3) 		7.8
(-1.4) 		6.2
(-2.1) 		4.5
(-2.9) 		17.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13003
Sequence Type Exemplar sequence
Representative Public ID F35E8.2 NCBI
Target Description F35E8.2 /REP_DB=WormBase Gene ID /WP=CE15954 /TR=O45454 /GB=CAB04298.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074577(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074577 NCBI Caenorhabditis elegans F35E8.2 (F35E8.2) mRNA, complete cds. 9/11 None
F35E8.2 ENSEMBL cdna:known chromosome:CEL140:V:15908602:15909176:1 gene:F35E8.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019509 6/11 Cross Hyb Matching Probes None
GENEFINDER00000019531 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15908601-15909176(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35E8.2
Entrez Gene 185293 Entrez gene
SwissProt O45454 EMBL-EBI
WormBase CE31932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04298 Hypothetical protein F35E8.2 [Caenorhabditis elegans] ref|NP_506978.2| F35E8.2 [Caenorhabditis elegans] 3.0E-77
blast CAB04292 Hypothetical protein F35E8.9 [Caenorhabditis elegans] ref|NP_506984.1| F35E8.9 [Caenorhabditis elegans] 5.0E-53
blast CAB03300 Hypothetical protein T06C12.14 [Caenorhabditis elegans] ref|NP_506976.1| T06C12.14 [Caenorhabditis elegans] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.3E-13
Sequence
Target Sequence 
>C. ELEGANS:179021_AT
gttcaggttgtttcctggttctcctggctccgcgagccaatacagttattggatctcagt
tgcacttcattcaacggcactgcttttatttggaccccagccgccactggttgcagcaac
gtcatttccgactcatcctgcgcagttttgtaccctgcgccagttccggctgacggatac
ctatcatctggaaaggatcagcaaagaccattggcctctcagagttcgtgcccgaaaaaa
tgcggattgtgttgtcagacttctgcctacaattgcccaaatgttgcttgtaagtctatg
atcttcccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGGTTGTTTCCTGGTTCTCCT 129 445 19 Antisense
GTTATTGGATCTCAGTTGCACTTCA 623 447 63 Antisense
GTTGCACTTCATTCAACGGCACTGC 477 439 77 Antisense
CAACGGCACTGCTTTTATTTGGACC 561 187 90 Antisense
TTGCAGCAACGTCATTTCCGACTCA 264 701 129 Antisense
GGCTGACGGATACCTATCATCTGGA 129 541 186 Antisense
CAGCAAAGACCATTGGCCTCTCAGA 158 205 217 Antisense
CCTCTCAGAGTTCGTGCCCGAAAAA 319 267 233 Antisense
ACTTCTGCCTACAATTGCCCAAATG 662 103 277 Antisense
ATTGCCCAAATGTTGCTTGTAAGTC 365 7 290 Antisense
TTGTAAGTCTATGATCTTCCCACGT 42 705 306 Antisense
Sequence Source Affymetrix Proprietary Database