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[179020_at]

Description C08E8.3 /REP_DB=WormBase Gene ID /WP=CE17377 /TR=O62042 /GB=CAB03859.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 20.2
(-3)
A 		75.1
(1.6)
P 		50.9
(-0.4)
A 		92.2
(3)
P 		72
B 20.7
(-3)
A 		59.7
(3)
A 		30.4
(-1.5)
A 		46.9
(1)
A 		39
C 21.1
(-3)
A 		32.7
(-1.3)
M 		24.8
(-2.5)
A 		62.3
(3)
P 		41
avr 20.7
(-3) 		55.8
(1.5) 		35.4
(-1.1) 		67.1
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 70.7
(3)
P 		34.3
(-1.7)
A 		45.1
(-0.3)
A 		31
(-2.2)
A 		41.4
(-0.8)
A 		24.6
(-3)
A 		46
B 19.8
(-0.4)
A 		37.6
(3)
A 		6.1
(-3)
A 		31.9
(1.9)
A 		17.5
(-0.8)
A 		28.4
(1.2)
A 		32
C 14.4
(-3)
A 		43.9
(2.3)
A 		27.4
(-0.7)
A 		48.1
(3)
P 		16.9
(-2.6)
A 		28.4
(-0.5)
A 		34
avr 35
(1.4) 		38.6
(3) 		26.2
(-2.6) 		37
(2.3) 		25.3
(-3) 		27.1
(-2.2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.4
(-3)
A 		16.3
(3)
P 		13.3
(1)
A 		13.5
(1.1)
P 		9
B 6.6
(-3)
A 		14.8
(3)
A 		7
(-2.7)
A 		10
(-0.5)
A 		8
C 7
(-3)
A 		9.4
(1.1)
M 		8.7
(-0.1)
A 		10.5
(3)
P 		4
avr 7
(-3) 		13.5
(3) 		9.7
(-0.5) 		11.3
(1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 13
(3)
P 		12.2
(2.3)
A 		9.8
(0.3)
A 		7.9
(-1.4)
A 		12.5
(2.6)
A 		6
(-3)
A 		7
B 6.9
(-0.1)
A 		12.5
(3)
A 		1.5
(-3)
A 		8.4
(0.8)
A 		7.1
(0.1)
A 		10.6
(2)
A 		11
C 5.4
(-3)
A 		13.4
(3)
A 		7
(-1.8)
A 		9.7
(0.2)
P 		5.5
(-2.9)
A 		9.5
(0.1)
A 		8
avr 8.4
(-0.9) 		12.7
(3) 		6.1
(-3) 		8.7
(-0.6) 		8.4
(-0.9) 		8.7
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12617
Sequence Type Exemplar sequence
Representative Public ID C08E8.3 NCBI
Target Description C08E8.3 /REP_DB=WormBase Gene ID /WP=CE17377 /TR=O62042 /GB=CAB03859.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075188(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075188 NCBI Caenorhabditis elegans C08E8.3 (C08E8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000008170 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18352722:18355210:1 10/11 None
C08E8.3 ENSEMBL cdna:known chromosome:CEL140:V:18352808:18355210:1 gene:C08E8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008154 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18352807-18355210(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E8.3
Entrez Gene 182408 Entrez gene
SwissProt O62042 EMBL-EBI
WormBase CE17377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03859 Hypothetical protein C08E8.3 [Caenorhabditis elegans] ref|NP_507589.1| C08E8.3 [Caenorhabditis elegans] 1.0E-129
blast CAB03859 Hypothetical protein C08E8.3 [Caenorhabditis elegans] ref|NP_507589.1| C08E8.3 [Caenorhabditis elegans] 1.0E-106
blast CAE71014 Hypothetical protein CBG17853 [Caenorhabditis briggsae] 6.0E-17
blast AAF60743 Hypothetical protein Y51B11A.1 [Caenorhabditis elegans] ref|NP_505150.1| Y51B11A.1 [Caenorhabditis elegans] 3.0E-12
blast AAF60743 Hypothetical protein Y51B11A.1 [Caenorhabditis elegans] ref|NP_505150.1| Y51B11A.1 [Caenorhabditis elegans] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:179020_AT
ttaaatcccatccataaaacctccacttcctcctttaccagtaaagttctcataataaaa
gttagtataaatactgatactaagacctcctttttagaaaaacacacaatgttgattatt
ctcgctctcttttgttttggagcattcgccaatgcagaactcgtctgcaaaaaaactttc
accgaaacttgtgttgaaacatgtaactgctccacaacagacatcccattgtacactgag
acctacaccaaagactggtggtacgcgaagcgtgacgaggcagtcaaagagagcggtttt
ccagaagcaagtggaactattggctacacaatgctttatgatagaaagacatgctcagca
tctaccgaatgtctttttacttcaactggcgacaaaagtagaatctccaattctacactg
gttattgtgacagccgataaaaaggtagccgagtttccggcctacttccttccacgcgaa
gatctcagtttccctgatgtggactgtgttcttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAATCCCATCCATAAAACCTCCA 601 659 190 Antisense
ATTCTCGCTCTCTTTTGTTTTGGAG 310 11 307 Antisense
CATTCGCCAATGCAGAACTCGTCTG 375 213 332 Antisense
TGTAACTGCTCCACAACAGACATCC 238 559 391 Antisense
ACATCCCATTGTACACTGAGACCTA 365 105 410 Antisense
AAAGACTGGTGGTACGCGAAGCGTG 605 121 439 Antisense
ATGCTCAGCATCTACCGAATGTCTT 296 43 540 Antisense
AATGTCTTTTTACTTCAACTGGCGA 624 161 557 Antisense
GAATCTCCAATTCTACACTGGTTAT 460 327 590 Antisense
TACTTCCTTCCACGCGAAGATCTCA 347 645 652 Antisense
CCCTGATGTGGACTGTGTTCTTGAC 683 259 681 Antisense
Sequence Source Affymetrix Proprietary Database