[Home] | [Total List]

[179018_at]

Description C17H1.3 /REP_DB=WormBase Gene ID /WP=CE15625 /TR=O45254 /GB=CAB07167.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.9
(-3)
A 		3
(-2.9)
A 		7
(3)
A 		5.8
(1.2)
A 		4
B 2
(-3)
A 		4.6
(3)
A 		2.9
(-0.9)
A 		2.8
(-1.2)
A 		3
C 2.1
(-3)
A 		4.7
(-2.3)
A 		4.6
(-2.3)
A 		23.2
(3)
A 		21
avr 2.3
(-3) 		4.1
(-1.7) 		4.8
(-1.2) 		10.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 12.9
(-1.5)
A 		1.9
(-3)
A 		5.5
(-2.5)
A 		46.6
(3)
A 		4.3
(-2.7)
A 		4.1
(-2.7)
A 		45
B 5.2
(-2.3)
A 		5.6
(-2.2)
A 		21.5
(3)
A 		8.7
(-1.2)
A 		5.3
(-2.3)
A 		3
(-3)
A 		19
C 4.1
(-3)
A 		7.1
(-2.2)
A 		26.5
(3)
A 		5
(-2.8)
A 		10.7
(-1.2)
A 		9.9
(-1.4)
A 		22
avr 7.4
(-2) 		4.9
(-3) 		17.8
(2.1) 		20.1
(3) 		6.8
(-2.3) 		5.7
(-2.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(-0.5)
A 		0.6
(-3)
A 		1.8
(3)
A 		0.9
(-1.5)
A 		1
B 0.6
(-3)
A 		1.1
(3)
A 		0.7
(-1.8)
A 		0.6
(-3)
A 		1
C 0.7
(-3)
A 		1.3
(-1.9)
A 		1.6
(-1.3)
A 		3.9
(3)
A 		3
avr 0.8
(-3) 		1
(-1.8) 		1.4
(0.6) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.4
(-2.1)
A 		0.7
(-3)
A 		1.2
(-2.7)
A 		11.8
(3)
A 		1.3
(-2.7)
A 		1
(-2.8)
A 		11
B 1.8
(-2)
A 		1.9
(-1.8)
A 		5.2
(3)
A 		2.3
(-1.2)
A 		2.2
(-1.4)
A 		1.1
(-3)
A 		4
C 1.5
(-2.5)
A 		2.2
(-1.7)
A 		6.7
(3)
A 		1
(-3)
A 		3.5
(-0.4)
A 		3.3
(-0.6)
A 		6
avr 1.9
(-2.5) 		1.6
(-3) 		4.4
(1.9) 		5
(3) 		2.3
(-1.8) 		1.8
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.502
Sequence Type Exemplar sequence
Representative Public ID C17H1.3 NCBI
Target Description C17H1.3 /REP_DB=WormBase Gene ID /WP=CE15625 /TR=O45254 /GB=CAB07167.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060894 NCBI Caenorhabditis elegans C17H1.3 (C17H1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000005625 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13112373:13115546:1 11/11 None
SNAP00000005610 ENSEMBL cdna:SNAP chromosome:CEL140:I:13113217:13114418:1 11/11 None
C17H1.3 ENSEMBL cdna:known chromosome:CEL140:I:13112373:13114418:1 gene:C17H1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13112303-13114349(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.3
Entrez Gene 182746 Entrez gene
SwissProt O45254 EMBL-EBI
WormBase CE15625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07167 Hypothetical protein C17H1.3 [Caenorhabditis elegans] ref|NP_493295.1| C17H1.3 [Caenorhabditis elegans] 0.0
blast CAB07167 Hypothetical protein C17H1.3 [Caenorhabditis elegans] ref|NP_493295.1| C17H1.3 [Caenorhabditis elegans] 1.0E-145
blast CAB07365 Hypothetical protein F22G12.1 [Caenorhabditis elegans] ref|NP_493302.1| F22G12.1 [Caenorhabditis elegans] 4.0E-34
blast CAB07365 Hypothetical protein F22G12.1 [Caenorhabditis elegans] ref|NP_493302.1| F22G12.1 [Caenorhabditis elegans] 5.0E-34
blast CAI79120 Hypothetical protein C17H1.10 [Caenorhabditis elegans] ref|NP_001021002.1| C17H1.10 [Caenorhabditis elegans] 1.0E-33
Sequence
Target Sequence 
>C. ELEGANS:179018_AT
ggccagcggaaggcgatcgagcacaaaattgtaatggagaaactcgagcaggcgcgaggg
atgagccaacgtcttgcagtgaatgaagcgaacagggaggtttacagattgttcatggca
atcatggaacctgtgaatgaagcaaggagtaatttgggagatatcaaagctttgtgcgac
aacaatggtgaagattacgaggattccgatacagcctgcgctgaatattattcttccgga
atcggaaattccaggtcgatatttgatattcgtacgaacgcattccgcgattttgttcta
aatcaaccgaattgcgatcacgaactagtgatagcgtgtcaaactgccataaactccatg
aaaaagcccatggaatccaccacaatccgttcggcatgtacgacgttgccaagatttatg
ggagagcaaaggcatttgcgtatcaccgcaattttacagaacattgatgacttgacaagc
acgcttgaggctatcagcgacgatgttcgactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAGCGGAAGGCGATCGAGCACA 15 545 592 Antisense
GCGAGGGATGAGCCAACGTCTTGCA 641 289 645 Antisense
GATTCCGATACAGCCTGCGCTGAAT 217 431 793 Antisense
ATATTCGTACGAACGCATTCCGCGA 47 17 857 Antisense
ACGCATTCCGCGATTTTGTTCTAAA 19 93 869 Antisense
GCGTGTCAAACTGCCATAAACTCCA 637 291 925 Antisense
AAAGCCCATGGAATCCACCACAATC 598 123 954 Antisense
ATCCGTTCGGCATGTACGACGTTGC 135 1 976 Antisense
GCGTATCACCGCAATTTTACAGAAC 269 291 1029 Antisense
GACAAGCACGCTTGAGGCTATCAGC 457 365 1065 Antisense
GGCTATCAGCGACGATGTTCGACTG 618 537 1080 Antisense
Sequence Source Affymetrix Proprietary Database