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[179017_at]

Description C03D6.6 /REP_DB=WormBase Gene ID /WP=CE15580 /TR=Q17604 /GB=CAA99761.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 7.5
(-3)
A 		17.4
(-1.3)
A 		42.4
(3)
A 		12.1
(-2.2)
A 		35
B 44.6
(-1.2)
A 		46.6
(-1)
A 		29.2
(-3)
A 		81.7
(3)
A 		53
C 4.2
(-3)
A 		10.8
(-2.5)
A 		4.9
(-3)
A 		89.7
(3)
A 		86
avr 18.8
(-3) 		24.9
(-2.1) 		25.5
(-2.1) 		61.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 49.4
(-2.4)
A 		6.1
(-3)
A 		27.6
(-2.7)
A 		69.2
(-2.1)
P 		283.1
(1.1)
P 		412.2
(3)
P 		406
B 18
(-3)
A 		24.6
(-2.9)
A 		17.3
(-3)
A 		88.1
(-2.1)
P 		286.5
(0.4)
P 		493.5
(3)
P 		476
C 10.7
(-3)
A 		35.7
(-2.6)
A 		7.8
(-3)
A 		44.2
(-2.5)
A 		203.8
(-0.5)
P 		482.7
(3)
P 		475
avr 26
(-2.9) 		22.1
(-2.9) 		17.6
(-3) 		67.2
(-2.3) 		257.8
(0.2) 		462.8
(3) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.7
(-2.4)
A 		3.8
(-1.7)
A 		11.1
(3)
A 		1.8
(-3)
A 		9
B 14.2
(1.2)
A 		11.5
(-0.3)
A 		6.8
(-3)
A 		17.4
(3)
A 		11
C 1.4
(-3)
A 		3.1
(-2.3)
A 		1.7
(-2.9)
A 		15.1
(3)
A 		14
avr 6.1
(-3) 		6.1
(-3) 		6.5
(-2.5) 		11.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 9.1
(-2.6)
A 		2.2
(-3)
A 		6
(-2.8)
A 		17.6
(-2.1)
P 		85.4
(2.1)
P 		100.4
(3)
P 		98
B 6.3
(-2.9)
A 		8.2
(-2.9)
A 		4.2
(-3)
A 		23.3
(-2.4)
P 		116.4
(0.7)
P 		184
(3)
P 		180
C 4
(-2.9)
A 		10.9
(-2.7)
A 		2
(-3)
A 		8.9
(-2.7)
A 		66
(-0.6)
P 		161.6
(3)
P 		160
avr 6.5
(-2.9) 		7.1
(-2.9) 		4.1
(-3) 		16.6
(-2.5) 		89.3
(0.5) 		148.7
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.647
Sequence Type Exemplar sequence
Representative Public ID C03D6.6 NCBI
Target Description C03D6.6 /REP_DB=WormBase Gene ID /WP=CE15580 /TR=Q17604 /GB=CAA99761.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060165 NCBI Caenorhabditis elegans C03D6.6 (C03D6.6) mRNA, complete cds. 11/11 None
SNAP00000028817 ENSEMBL cdna:SNAP chromosome:CEL140:I:9665297:9665925:-1 11/11 None
GENEFINDER00000028829 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9665297:9665925:-1 11/11 None
C03D6.6 ENSEMBL cdna:known chromosome:CEL140:I:9665297:9665925:-1 gene:C03D6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9665227-9665856(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03D6.6
Entrez Gene 182160 Entrez gene
SwissProt Q17604 EMBL-EBI
WormBase CE15580 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99761 Hypothetical protein C03D6.6 [Caenorhabditis elegans] ref|NP_492566.1| C03D6.6 [Caenorhabditis elegans] 5.0E-78
blast CAE60203 Hypothetical protein CBG03764 [Caenorhabditis briggsae] 2.0E-26
Sequence
Target Sequence 
>C. ELEGANS:179017_AT
taagaaaaatgatcgtcctcgcccattgtggatcttgaaaatccataaacggcttagctt
gtttgagttcaagcgttatgcaacaggaattggcaaagacgacggacaagacatctcgtg
ggtgctgaaaggaaatgcaaagaacaatgtgtatcaggttactgttgaaactatggagaa
ttgtgaaacggacgagtgcaagaaagtgatctgggtgcccgatgagttggcagaatccac
cggaacgatgttcgaagatttcaaggaagaccaacctcaggaatctgtgtcttcgatcag
taataatgaagcaaattgggggagttctgtgaatgaattggacgaaaattatgaaaaaat
gcagaaagaggaaacatttgatccatatgattcggattccgatacatccgaggattccga
cttcgatgaggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGAAAAATGATCGTCCTCGCCCA 177 635 24 Antisense
TCCTCGCCCATTGTGGATCTTGAAA 38 593 39 Antisense
AACGGCTTAGCTTGTTTGAGTTCAA 15 143 71 Antisense
GAGTTCAAGCGTTATGCAACAGGAA 93 399 88 Antisense
GACAAGACATCTCGTGGGTGCTGAA 472 365 128 Antisense
TGATCTGGGTGCCCGATGAGTTGGC 550 563 230 Antisense
ATGAGTTGGCAGAATCCACCGGAAC 284 43 245 Antisense
GGAAGACCAACCTCAGGAATCTGTG 426 531 288 Antisense
GGAATCTGTGTCTTCGATCAGTAAT 525 533 303 Antisense
GGATTCCGATACATCCGAGGATTCC 224 509 417 Antisense
GAGGATTCCGACTTCGATGAGGATT 697 401 433 Antisense
Sequence Source Affymetrix Proprietary Database