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[179016_at]

Description T05A1.5 /REP_DB=WormBase Gene ID /WP=CE03625 /TR=Q22189 /GB=CAA92482.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 81
(2.8)
P 		44.4
(-0.1)
A 		8
(-3)
A 		82.9
(3)
P 		75
B 100.3
(3)
A 		58.1
(-0.2)
A 		21.5
(-3)
A 		64.5
(0.3)
A 		79
C 62.4
(2.6)
A 		55.2
(0.6)
A 		63.7
(3)
A 		42.6
(-3)
A 		21
avr 81.2
(3) 		52.6
(-0.4) 		31.1
(-3) 		63.3
(0.9) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 82.3
(3)
A 		55.8
(0.5)
A 		54.6
(0.4)
A 		27.3
(-2.2)
A 		21.1
(-2.8)
A 		19
(-3)
A 		63
B 62
(2)
A 		73.8
(3)
A 		48.8
(0.9)
A 		8.9
(-2.5)
A 		3.6
(-3)
A 		22.8
(-1.4)
A 		70
C 44
(-0.3)
A 		88.3
(3)
A 		11.7
(-2.6)
A 		23.3
(-1.8)
A 		6.9
(-3)
A 		19
(-2.1)
A 		81
avr 62.8
(2.1) 		72.6
(3) 		38.4
(-0.3) 		19.8
(-2.1) 		10.5
(-3) 		20.3
(-2.1) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 29.5
(3)
P 		9.6
(-1.4)
A 		2.1
(-3)
A 		12.1
(-0.8)
P 		27
B 32
(3)
A 		14.3
(-0.9)
A 		5
(-3)
A 		13.7
(-1.1)
A 		27
C 20.7
(2.4)
A 		15.9
(0.5)
A 		22.2
(3)
A 		7.2
(-3)
A 		15
avr 27.4
(3) 		13.3
(-1.8) 		9.8
(-3) 		11
(-2.6) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15.2
(1.2)
A 		19.9
(3)
A 		11.9
(-0.1)
A 		6.9
(-2.1)
A 		6.4
(-2.3)
A 		4.6
(-3)
A 		15
B 21.6
(2.2)
A 		24.6
(3)
A 		11.9
(-0.3)
A 		2.4
(-2.8)
A 		1.5
(-3)
A 		8.5
(-1.2)
A 		23
C 16.3
(0.4)
A 		27
(3)
A 		3
(-2.8)
A 		4.7
(-2.4)
A 		2.2
(-3)
A 		6.4
(-2)
A 		25
avr 17.7
(1.2) 		23.8
(3) 		8.9
(-1.4) 		4.7
(-2.6) 		3.4
(-3) 		6.5
(-2.1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8748
Sequence Type Exemplar sequence
Representative Public ID T05A1.5 NCBI
Target Description T05A1.5 /REP_DB=WormBase Gene ID /WP=CE03625 /TR=Q22189 /GB=CAA92482.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069295 NCBI Caenorhabditis elegans T05A1.5 (T05A1.5) mRNA, complete cds. 11/11 None
SNAP00000033936 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9547243:9550803:1 11/11 None
GENEFINDER00000033948 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9547243:9548130:1 11/11 None
T05A1.5 ENSEMBL cdna:known chromosome:CEL140:IV:9547243:9548130:1 gene:T05A1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9547248-9548136(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A1.5
Entrez Gene 188077 Entrez gene
SwissProt Q22189 EMBL-EBI
WormBase CE03625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92482 Hypothetical protein T05A1.5 [Caenorhabditis elegans] ref|NP_501696.1| T05A1.5 [Caenorhabditis elegans] 1.0E-112
blast CAA92482 Hypothetical protein T05A1.5 [Caenorhabditis elegans] ref|NP_501696.1| T05A1.5 [Caenorhabditis elegans] 1.0E-111
blast CAE72776 Hypothetical protein CBG20031 [Caenorhabditis briggsae] 4.0E-89
blast CAE72776 Hypothetical protein CBG20031 [Caenorhabditis briggsae] 9.0E-89
blast AAA20671 Hypothetical protein T22F7.1 [Caenorhabditis elegans] ref|NP_497209.1| T22F7.1 [Caenorhabditis elegans] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 3.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501696.1 3 76-98,137-159,166-188
T05A1.5 3 76-98,137-159,166-188
SNAP00000033936 3 76-98,137-159,166-188
GENEFINDER00000033948 3 76-98,137-159,166-188
Sequence
Target Sequence 
>C. ELEGANS:179016_AT
ccaacttctcttgttactgatactttattagaagatgaagaatatgattttcttaaaaaa
ggatcatctggaaaactgtcagatgaagaactacttgcaagaacaattgagaaagcactc
aaaacaaaaaagcttgcacagtcaccaaatatgacgtcatctataaaagttgagacatct
ataaaagttgaggatttgttagatcagattggaatatggcatccgtacccactcttcatc
acattttctatggcatttttatggttactctctgtaatgccgacaatgtcaccaagttat
atggctccatcttctccatgtacattggataattgctcatttgtaactgtgcaaaatgag
ttcaacatcactaaaacattgattgatcccggtgagatgaccagctcgattttcttttta
ggaaatggaattcttggacaaatctatgcagttgcagctgacagaataggacgaagacct
gtactaattgcgagcttattcatatctggactatcaggaattggtgcagcttacgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTTCTCTTGTTACTGATACTT 77 277 31 Antisense
TTGGAATATGGCATCCGTACCCACT 316 709 239 Antisense
CTCTTCATCACATTTTCTATGGCAT 47 231 262 Antisense
GGCATTTTTATGGTTACTCTCTGTA 507 537 282 Antisense
TACTCTCTGTAATGCCGACAATGTC 547 645 296 Antisense
AAGTTATATGGCTCCATCTTCTCCA 364 157 324 Antisense
GATTGATCCCGGTGAGATGACCAGC 438 433 411 Antisense
GAGATGACCAGCTCGATTTTCTTTT 377 395 424 Antisense
GAAGACCTGTACTAATTGCGAGCTT 162 339 503 Antisense
GCGAGCTTATTCATATCTGGACTAT 457 289 520 Antisense
TCAGGAATTGGTGCAGCTTACGCCC 572 619 544 Antisense
Sequence Source Affymetrix Proprietary Database