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[179015_at]

Description F53F1.6 /REP_DB=WormBase Gene ID /WP=CE10942 /TR=Q9XVM8 /GB=CAB03123.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_high_8_8 > 35      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 44      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 111.1
(-0)
P 		135.9
(2.6)
P 		82.8
(-3)
P 		139.5
(3)
M 		57
B 124.3
(3)
P 		119.4
(2.5)
P 		61.4
(-3)
P 		89.2
(-0.3)
P 		63
C 136.2
(1.5)
P 		130.2
(1.1)
P 		155.4
(3)
P 		77.7
(-3)
A 		78
avr 123.9
(2) 		128.5
(3) 		99.9
(-3) 		102.1
(-2.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 582
1 2 3 4 5 6 range
A 147.6
(-2.4)
P 		169.5
(-2)
P 		243.8
(-0.9)
P 		163.4
(-2.1)
P 		105.6
(-3)
P 		505.1
(3)
P 		400
B 184.1
(-2.7)
P 		203
(-2.4)
P 		238.2
(-2)
P 		184.8
(-2.7)
P 		160.6
(-3)
P 		610.5
(3)
P 		450
C 177.8
(-2.1)
P 		178.8
(-2.1)
P 		161.2
(-2.3)
P 		158.2
(-2.3)
P 		92.7
(-3)
P 		674.9
(3)
P 		582
avr 169.8
(-2.4) 		183.8
(-2.2) 		214.4
(-1.8) 		168.8
(-2.4) 		119.6
(-3) 		596.8
(3) 		477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 40.5
(3)
P 		29.5
(-0.3)
P 		21.7
(-2.6)
P 		20.4
(-3)
M 		20
B 39.6
(3)
P 		29.5
(0.6)
P 		14.2
(-3)
P 		19
(-1.9)
P 		25
C 45.1
(1.7)
P 		37.4
(0.5)
P 		54.2
(3)
P 		13.1
(-3)
A 		41
avr 41.7
(3) 		32.1
(0.6) 		30
(0.1) 		17.5
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 27.2
(-3)
P 		60.3
(-0.9)
P 		53.1
(-1.4)
P 		41.4
(-2.1)
P 		31.9
(-2.7)
P 		123
(3)
P 		96
B 64
(-2.5)
P 		67.6
(-2.4)
P 		57.9
(-2.7)
P 		49
(-3)
P 		65.3
(-2.5)
P 		227.7
(3)
P 		179
C 65.9
(-1.9)
P 		54.6
(-2.2)
P 		41
(-2.7)
P 		31.8
(-2.9)
P 		30
(-3)
P 		225.9
(3)
P 		196
avr 52.4
(-2.5) 		60.8
(-2.2) 		50.7
(-2.6) 		40.7
(-3) 		42.4
(-2.9) 		192.2
(3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12706
Sequence Type Exemplar sequence
Representative Public ID F53F1.6 NCBI
Target Description F53F1.6 /REP_DB=WormBase Gene ID /WP=CE10942 /TR=Q9XVM8 /GB=CAB03123.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073925 NCBI Caenorhabditis elegans F53F1.6 (F53F1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000038192 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13418824:13420196:-1 9/11 None
F53F1.6 ENSEMBL cdna:known chromosome:CEL140:V:13418708:13420196:-1 gene:F53F1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038182 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13418816-13420196(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53F1.6
Entrez Gene 186170 Entrez gene
SwissProt Q9XVM8 EMBL-EBI
WormBase CE10942 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03123 Hypothetical protein F53F1.6 [Caenorhabditis elegans] ref|NP_506326.1| F53F1.6 [Caenorhabditis elegans] 1.0E-155
blast CAB03123 Hypothetical protein F53F1.6 [Caenorhabditis elegans] ref|NP_506326.1| F53F1.6 [Caenorhabditis elegans] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:179015_AT
acggcttgatgcaattttctgcttcaatgaatacaccgtatacggacaagaggacataga
acaaattaaagaaaatataaaaaatgaatataaaacatcggttgcccatttcagcaagct
atgggaagatatcaaagcaatgagcgttcttcttcgttcatgtttcaataaaacatggga
ccgtcattccgaagtgactctccttactgtgatccaaacccttgatgaatccattaaaca
cagaggtggccctaattatgacaagaacaatgacaatttcttcctcttgagagaatgtgg
atccgctttaagagagtgtaacactcaaattaaaatggacgaaaaaaatttaatcattcg
gataataaacacaaaagatttagaaggaggctttaaaaaaagcttagaaactctattgaa
tgaaaatgaaagtgcgaattttatcaagttactcgcagaatacctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCTTGATGCAATTTTCTGCTTC 208 97 255 Antisense
CGGTTGCCCATTTCAGCAAGCTATG 100 245 353 Antisense
AAGCAATGAGCGTTCTTCTTCGTTC 376 151 389 Antisense
GTTCTTCTTCGTTCATGTTTCAATA 665 443 400 Antisense
AAACATGGGACCGTCATTCCGAAGT 511 127 425 Antisense
GTCATTCCGAAGTGACTCTCCTTAC 544 467 437 Antisense
TCCTTACTGTGATCCAAACCCTTGA 54 589 455 Antisense
GAGGTGGCCCTAATTATGACAAGAA 130 403 497 Antisense
GAACAATGACAATTTCTTCCTCTTG 197 353 519 Antisense
GAGAGAATGTGGATCCGCTTTAAGA 81 395 543 Antisense
ATCAAGTTACTCGCAGAATACCTGG 80 27 697 Antisense
Sequence Source Affymetrix Proprietary Database