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[179014_at]

Description C49A1.5 /REP_DB=WormBase Gene ID /WP=CE15723 /TR=O17676 /GB=CAB05705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 24.4
(0.1)
A 		19.5
(-0.8)
A 		8.1
(-3)
A 		39.6
(3)
A 		32
B 24.6
(-1.5)
A 		48.6
(3)
A 		38.4
(1.1)
A 		16.4
(-3)
A 		32
C 16.9
(-3)
A 		23.9
(-2.6)
A 		21.4
(-2.7)
A 		115.1
(3)
A 		98
avr 22
(-3) 		30.7
(-1.5) 		22.6
(-2.9) 		57
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 51.6
(3)
A 		2.5
(-3)
A 		10.2
(-2.1)
A 		9.5
(-2.1)
A 		26.8
(-0)
A 		18.9
(-1)
A 		49
B 34.7
(1.4)
A 		24.4
(-0.1)
A 		8
(-2.5)
A 		4.6
(-3)
A 		29.6
(0.6)
A 		46
(3)
A 		41
C 4.8
(-3)
A 		54.5
(3)
A 		8.3
(-2.6)
A 		51.1
(2.6)
A 		29.2
(-0.1)
A 		9
(-2.5)
A 		50
avr 30.4
(3) 		27.1
(2.1) 		8.8
(-3) 		21.7
(0.6) 		28.5
(2.5) 		24.6
(1.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.9
(3)
A 		4.2
(-1.1)
A 		2.1
(-3)
A 		5.8
(0.3)
A 		7
B 7.8
(0)
A 		12
(3)
A 		8.9
(0.8)
A 		3.5
(-3)
A 		9
C 5.6
(-3)
A 		6.9
(-2.4)
A 		7.5
(-2.2)
A 		19.4
(3)
A 		14
avr 7.4
(-0.9) 		7.7
(-0.4) 		6.2
(-3) 		9.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.5
(3)
A 		0.9
(-3)
A 		2.2
(-2.1)
A 		2.4
(-2)
A 		8.1
(2)
A 		4.6
(-0.4)
A 		9
B 12.1
(1.1)
A 		8.1
(-0.4)
A 		1.9
(-2.7)
A 		1.2
(-3)
A 		12
(1.1)
A 		17.2
(3)
A 		16
C 1.8
(-3)
A 		16.6
(3)
A 		2.1
(-2.9)
A 		10.3
(0.4)
A 		9.5
(0.1)
A 		3
(-2.5)
A 		15
avr 7.8
(1.4) 		8.5
(1.9) 		2.1
(-3) 		4.6
(-1.1) 		9.9
(3) 		8.3
(1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.572
Sequence Type Exemplar sequence
Representative Public ID C49A1.5 NCBI
Target Description C49A1.5 /REP_DB=WormBase Gene ID /WP=CE15723 /TR=O17676 /GB=CAB05705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061084 NCBI Caenorhabditis elegans C49A1.5 (C49A1.5) mRNA, complete cds. 11/11 None
GENEFINDER00000008666 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14245778:14249293:1 11/11 None
SNAP00000008660 ENSEMBL cdna:SNAP chromosome:CEL140:I:14247262:14249293:1 10/11 None
C49A1.5 ENSEMBL cdna:known chromosome:CEL140:I:14245517:14249293:1 gene:C49A1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14245447-14249224(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A1.5
Entrez Gene 183587 Entrez gene
SwissProt O17676 EMBL-EBI
WormBase CE15723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05705 Hypothetical protein C49A1.5 [Caenorhabditis elegans] ref|NP_493485.1| C49A1.5 [Caenorhabditis elegans] 0.0
blast AAG00054 Hypothetical protein ZK381.2 [Caenorhabditis elegans] ref|NP_501075.1| ZK381.2 [Caenorhabditis elegans] sp|Q23469|YPTJ_CAEEL Hypothetical protein ZK381.2 in chromosome IV 0.0
blast CAE61770 Hypothetical protein CBG05730 [Caenorhabditis briggsae] 0.0
blast CAB05705 Hypothetical protein C49A1.5 [Caenorhabditis elegans] ref|NP_493485.1| C49A1.5 [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.5E-109
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493485.1 1 12-31
C49A1.5 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:179014_AT
taaaggtatggcctcaactctgtccgacttcagttttaccgaccttgtcaaaagtctccg
ttcatctcaaaccataaaaaatggaaaagtcgttgtaagacccgatgcatacaattccac
gtggatccacaatagccagcatgtcagtttcgatacgagtgttaaagtgaaaagtccatc
attggtacatgtgcagctgccggttgataaaaatgggaaaaggaatcattctagggattt
gtggaagattgagtttggatcattgaatgagacaattcgagaggaagatgtcagagcaat
cgaggaggacatcaatagaatgaagaattcaacagttatctccacactagcactactcct
cccaaactctgatttctacttgccaatcgtttttaaatgttactttgacgctttttacaa
agccgcattcgtggctcgaaccggtgttccgagatgcccaaacgcggatatttgtgatct
accacaacgagaagactataagtgtattcattcagatgctcaatacatttctggacccga
catgcgtcctgttacttatcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGGTATGGCCTCAACTCTGTCC 38 641 900 Antisense
CTCTGTCCGACTTCAGTTTTACCGA 183 231 917 Antisense
TTGTCAAAAGTCTCCGTTCATCTCA 586 705 944 Antisense
TAAGACCCGATGCATACAATTCCAC 572 637 995 Antisense
ATAGCCAGCATGTCAGTTTCGATAC 103 23 1031 Antisense
CATTGGTACATGTGCAGCTGCCGGT 661 217 1079 Antisense
TCAACAGTTATCTCCACACTAGCAC 108 631 1228 Antisense
CCTCCCAAACTCTGATTTCTACTTG 206 267 1257 Antisense
GTGGCTCGAACCGGTGTTCCGAGAT 523 491 1330 Antisense
TACATTTCTGGACCCGACATGCGTC 33 645 1423 Antisense
GACATGCGTCCTGTTACTTATCATT 672 369 1438 Antisense
Sequence Source Affymetrix Proprietary Database